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@calabrialab

A. Calabria codelab

A. Calabria Codelab

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  1. ISAnalytics ISAnalytics Public

    ISAnalytics is an R package developed to analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies.

    R 3 1

  2. RAAVioli RAAVioli Public

    Bioinformatics pipeline for AAV integration sites and viral rearrangements

    R 2

  3. RISingVIS RISingVIS Public

    R 1

  4. SHARES SHARES Public

    SHARES: SHAnnon entropy REscaling using Shape-constrained splines

    R

  5. Code_AAV_integrations Code_AAV_integrations Public

    AAV integrations using RAAVioli in Ferrari, Jacob, Cesana et al, Cell Stem Cell

    Python 1

  6. Code_HSPCdynamics Code_HSPCdynamics Public

    Code for Calabria et al

    HTML

Repositories

Showing 9 of 9 repositories
  • Code_HSPCdynamics Public

    Code for Calabria et al

    calabrialab/Code_HSPCdynamics’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 21, 2024
  • ISAnalytics Public

    ISAnalytics is an R package developed to analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies.

    calabrialab/ISAnalytics’s past year of commit activity
    R 3 CC-BY-4.0 1 2 1 Updated Feb 4, 2024
  • InCliniGene Public

    Graph Database solution for Clonal tracking with vector integration sites

    calabrialab/InCliniGene’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Nov 6, 2023
  • calabrialab/RISingVIS’s past year of commit activity
    R 1 CC-BY-4.0 0 0 0 Updated Jun 21, 2023
  • Code_AAV_IS_intrathymus Public

    Code for Calabria et al, Intrathymic AAV delivery

    calabrialab/Code_AAV_IS_intrathymus’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 22, 2022
  • RAAVioli Public

    Bioinformatics pipeline for AAV integration sites and viral rearrangements

    calabrialab/RAAVioli’s past year of commit activity
    R 2 0 0 0 Updated Oct 19, 2022
  • Code_cHSPC Public

    Code and data analysis for the manuscript by Quaranta et al

    calabrialab/Code_cHSPC’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 30, 2022
  • Code_AAV_integrations Public

    AAV integrations using RAAVioli in Ferrari, Jacob, Cesana et al, Cell Stem Cell

    calabrialab/Code_AAV_integrations’s past year of commit activity
    Python 0 1 0 0 Updated Aug 31, 2022
  • SHARES Public

    SHARES: SHAnnon entropy REscaling using Shape-constrained splines

    calabrialab/SHARES’s past year of commit activity
    R 0 0 0 0 Updated May 11, 2021

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