Merge pull request #69 from calico/issue-68

Issue 68 - added 1.1.3 to CRAN
calico · Sep 24, 2023 · 3afcba7 · 3afcba7
2 parents 36f49ca + 0a5bf8c
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -9,3 +9,4 @@ LICENSE.md
 cran-comments.md
 ^CRAN-RELEASE$
 ^CRAN-SUBMISSION$
+^cran-comments\.md$
diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
-Version: 1.1.1
-Date: 2023-02-02 22:11:46 UTC
-SHA: 29636b188489eaa830a5c3613242c60ae2965b1a
+Version: 1.1.3
+Date: 2023-09-21 04:48:58 UTC
+SHA: 0e68cf04058f6b4045b5a7fc6f947eb84397133e
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: romic
 Type: Package
 Title: R for High-Dimensional Omic Data
-Version: 1.1.2
+Version: 1.1.3.9000
 Authors@R: c(
     person(
       given = "Sean",

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,17 @@
+## romic 1.1.3
+
+### New Features
+
+- `get_tomic_table()` makes it easy to pull individual tables out of tomic objects. #55
+
+### Minor Improvements and Fixes
+
+- Bug fix in `add_pcs()` #52
+- added option to not display percent variance explained on PCs to `add_pcs()` #53
+- Added passing of axis and colorbar labels in `plot_heatmap()` #60
+- Updated romic-package alias so package documentation properly displays with `?romic` #63
+- Renamed tests and greatly expanded test coverage. #64
+
 ## romic 1.1.1
 
 ### New Features
@@ -6,7 +20,6 @@
 - `add_pc_loadings()` changed to `add_pcs()` for accuracy. Added fraction of variability explained by PCs to `add_pcs()`. #32
 - `plot_univariate()` and `plot_bivariate()` supporting providing a partial string match to a variable name. This helps to generate consisitent plots even if names might change (like PC1 (10%)). #44
 - tidy_omics and triple_omics can now include a list with unstructured data. This puts the convention more in line with an H5AD file. #43. This is currently only used to return the fraction of variance explained by each PC as part of `add_pcs()`. #42
-- Updated synteax for 
 
 ### Minor Improvements and Fixes
 

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,9 +1,9 @@
 ## Test environments
-* local OS X install, R 4.1.2
-* Ubuntu 20.04 - Devel (Github Actions), R (2023-02-01 r83747)
-* Ubuntu 20.04 - Release (Github Actions), R 4.2.2
-* Windows - latest (Github Actions), R 4.2.2
-* OSX - latest (Github Actions), R 4.2.2
+* local OS X install, R 4.3.1
+* Ubuntu 22.04.3 LTS - Devel (Github Actions), R 4.4.0 (ge:16)
+* Ubuntu 22.04.3 LTS - Release (Github Actions), 4.3.1 (2023-06-16)
+* Windows - Windows Server 2022 x64 (Github Actions), R 4.3.1
+* OSX - macOS Monterey 12.6.8 (Github Actions), R 4.3.1
 
 ## R CMD check results
 R CMD check --as-cran romic_1.1.1.tar.gz