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An intentionally very simple and somewhat programmable BLAST Web server.

C. Titus Brown ctb@msu.edu

Copyright: 2013, Michigan State University. License: BSD


Requirements:

  • Python 2.x, x >= 5.
  • screed
  • jinja2

Suggested additional packages:

  • virtualenv

Installation:

  • make a new virtualenv:

      python -m virtualenv env
    
  • activate virtualenv and install screed and jinja2

      . env/bin/activate
      pip install git+https://github.com/ged-lab/screed.git
      pip install jinja2
    

Configure:

  • point #! at top of www/*.cgi at the virtualenv python

  • edit www/_mypath.py to point to the right lib/ directory

  • edit lib/blastkit_config.py to contain the right paths.

  • create www/files & chmod appropriately:

      mkdir www/files
      chmod a+rwxt www/files
    
  • configure blastall location

  • check databases for indexing.

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