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The prototype of Bayesian inference for MHN #7

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merged 18 commits into from
Jun 23, 2023
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@pawel-czyz pawel-czyz commented Jun 20, 2023

This PR adds MHN the utilities for Bayesian inference with MHN likelihood.

It is worth noting that this is a prototype:

  • The unit tests are very scarce.
  • There is no Snakemake workflow at the moment. The illustration how to run the inference is in the temporary workflows/tmp_workflow.py, which will be refactored into a Snakemake workflow in a future pull request.

This pull request resolves #4 and, partially, #3.

@pawel-czyz pawel-czyz added the 🚂 enhancement New feature or request label Jun 20, 2023
@pawel-czyz pawel-czyz marked this pull request as ready for review June 22, 2023 08:56
@pawel-czyz pawel-czyz requested a review from kerupp June 22, 2023 08:58
@pawel-czyz pawel-czyz changed the title MHN inference The prototype of MHN inference Jun 22, 2023
@pawel-czyz pawel-czyz changed the title The prototype of MHN inference The prototype of Bayesian inference for MHN Jun 22, 2023
@pawel-czyz pawel-czyz merged commit 8238fce into main Jun 23, 2023
@pawel-czyz pawel-czyz deleted the pawel/mhn-inference branch June 23, 2023 06:21
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PyMC Op for vanilla MHN
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