build docker container failed #64
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zengtian2680
added
documentation
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Hi Tian! Thanks for getting in touch. I'll try tomorrow to see if I can reproduce the issue and update the FAQ accordingly. Hope that fixes it for you though :) |
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Hey Darcy, |
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Hey Tian, Good eye! I didn't spot the extra 'b' there. So the problem was that the new version kept the model files separately to the actual python package installed by There was also a minor change to the output format that caused my parsing script to crash. Anyway, this should hopefully be resolved in Let me know how you go :) |
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Just FYI. I've release 1.2.3 because they've updated SP6 again in the last few hours. Essentially 1.2.2 and 1.2.3 are identical, except for references to SP 6.0c |
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Hey Darcy, Thanks a lot! I will try 1.2.3 later on my computer :) Tian |
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Hey @zengtian2680 Haven't heard back so I'm assuming this is resolved? Thanks again! |
Dear authors,
I am trying to install predector docker according to your introduction. However it turned out to be an error despite long struggle. Sorry that I hardly understand what was the reason so I paste my error message here for some help... Please see below. I am using Mac OS Monterey 12.0.1
Thank you.
Tian
Error message
[+] Building 28.6s (16/16) FINISHED
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 1.27kB 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/predector/predector-base:1.2.1 1.4s
=> [auth] predector/predector-base:pull token for registry-1.docker.io 0.0s
=> [ 1/11] FROM docker.io/predector/predector-base:1.2.1@sha256:ed9ea0a4 0.0s
=> [internal] load build context 0.0s
=> => transferring context: 3.71kB 0.0s
=> CACHED [ 2/11] RUN mkdir -p /tmp/onbuild 0.0s
=> CACHED [ 3/11] COPY signalp-3.0.Linux.tar.Z /tmp/onbuild/ 0.0s
=> CACHED [ 4/11] COPY signalp-4.1g.Linux.tar.gz /tmp/onbuild/ 0.0s
=> CACHED [ 5/11] COPY signalp-5.0b.Linux.tar.gz /tmp/onbuild/ 0.0s
=> CACHED [ 6/11] COPY signalp-6.0b.fast.tar.gz /tmp/onbuild/ 0.0s
=> CACHED [ 7/11] COPY targetp-2.0.Linux.tar.gz /tmp/onbuild/ 0.0s
=> CACHED [ 8/11] COPY deeploc-1.0.All.tar.gz /tmp/onbuild/ 0.0s
=> CACHED [ 9/11] COPY phobius101_linux.tar.gz /tmp/onbuild/ 0.0s
=> CACHED [10/11] COPY tmhmm-2.0c.Linux.tar.gz /tmp/onbuild/ 0.0s
=> ERROR [11/11] RUN echo && signalp3-register "/tmp/onbuild/$(basenam 27.1s
executor failed running [/bin/sh -c echo && signalp3-register "/tmp/onbuild/$(basename "${SIGNALP3}")" && echo && signalp4-register "/tmp/onbuild/$(basename "${SIGNALP4}")" && echo && signalp5-register "/tmp/onbuild/$(basename "${SIGNALP5}")" && echo && signalp6-register "/tmp/onbuild/$(basename "${SIGNALP6}")" && echo && targetp2-register "/tmp/onbuild/$(basename "${TARGETP2}")" && echo && deeploc-register "/tmp/onbuild/$(basename "${DEEPLOC}")" && echo && phobius-register "/tmp/onbuild/$(basename "${PHOBIUS}")" && echo && tmhmm2-register "/tmp/onbuild/$(basename "${TMHMM}")" && echo && rm -rf -- /tmp/onbuild]: exit code: 1
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