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OncoTracer v2.1.0
Local browser setup and results dashboards, clearer matched HTML/PDF knowledge reports,
and safer setup/uninstall recovery. The copied executable runs the native workflow
without a Nextflow dependency.
- Choose ONT or Illumina, review detected FASTQs, label samples, and save or run from the local browser.
- Open organized result dashboards with final CNA tables, plots, reports, and retained diagnostics.
- Knowledge HTML/PDF reports and their shared sample indexes are under
04_cna_custom_plots/llm_reports/. - Existing v2.0.0 releases and versioned tool installations are preserved.
Validated on exact commit: 5bb0646b1d1b1b923cdb9d47fbbb71c1ad6f4cb4
- Native v2 CI passed on the exact release commit.
- QuickStart 1 passed semantic v1.1/native-v2 parity for Illumina and ONT.
- QuickStart 2 passed semantic v1.1/native-v2 parity for all three HCC1143 libraries.
- The frozen comparator uses OncoTracer v1.1, SAMURAI v1.4.0, pinned Nextflow, and immutable container digests.
- Container:
ghcr.io/cfarkas/oncotracer@sha256:c48ce0db3b058d8c1cea2f39da13277a4536973eeb87a3f9eb32bab7feea4126