a typo? map <- obj.bigSNP$map[-2]

[XcodeBio]

Hi Sam,

Thank you very much for the wonderful PRS tutorial. It is very helpful.

I was going through your LDpred-2 tutorial and I there might be a typo in section 3 ("Reformat data in preparation of LDpred2").

extract the SNP information from the genotype

map <- obj.bigSNP$map[-2]

Should this be: map <- obj.bigSNP$map[-3]

Thanks

[choishingwan]

You are correct. I think there might have been a version change to bigsnpr which changes some of the data structure. Will try to update this part of the tutorial now.

…

On Wed, Nov 4, 2020 at 10:29 AM XcodeBio ***@***.***> wrote: Hi Sam, Thank you very much for the wonderful PRS tutorial. It is very helpful. I was going through your LDpred-2 tutorial and I there might be a typo in section 3 ("Reformat data in preparation of LDpred2"). extract the SNP information from the genotype map <- obj.bigSNP$map[-2] Should this be: map <- obj.bigSNP$map[-3] Thanks — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#14>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAJTRYRLAZ5LBNLTMVOPKNTSOFXNBANCNFSM4TKGBUWA> .

[XcodeBio]

Thank you!