softSV-docker

Docker image running Ubuntu 16.04 with SoftSV version 1.4.2 installed

Setup:

• Ubuntu 16.04
  • libboost
  • bamtoolslib
• seqan 2.0.0
• SoftSV 1.4.2

Get the image:

docker pull chrishah/softsv:1.4.2

Use the container:

docker run --rm -v $(pwd):/in/ -w /in/ chrishah/softsv:1.4.2 SoftSV -h