4.0.0

Breaking

• Add Territory, return it from territory(), and use BED12 blocks (#61) (aec489c)
  • record.territory() returns a Territory instead of an iterator of spans. Use record.spans() wherever each piece or its strand matters.
  • A custom record overrides spans() instead of territory(), which is now final; defining territory() raises a TypeError naming spans().
  • A Bed12 is its blocks: its territory holds only its exons, and a query touching only an intron no longer finds it in TreeDetector or TabixDetector. To find a Bed12 by its whole extent, add it as a Bed6.
• bedspec now requires typeline 2.3.0 or newer.

Features

• Territory, an immutable set of bases with |, &, -, .length, contains and in (#61)

Build

• Require typeline 2.3.0 (#62) (aa5d84b)

Continuous Integration

• Bump ruff from 0.16.8 to 0.16.9 in the python-dev group (#60) (5a29a63)
• Bump to 4.0.0 (#63) (6f7dc37)