L1000 Inference function

[XiaohanChen97]

Hi Ted,

I came from the link website--https://clue.io/contest, which mentioned that an implementation of INFERENCE CHALLENGE was in cmapR.

But I did not find the function about that in cmapR. I was wondering if that really implemented in cmapR or you know any other R packages implement it?

Thank you,
Chen

[tnat1031]

Hi Chen, Sorry for the confusion. The inference contest code is in cmapR, but it is not on the master branch. It's on a separate branch called 'inf-contest'. Here is the link to the relevant code on that branch: https://github.com/cmap/cmapR/tree/inf-contest/contests Best, Ted

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On Thu, Apr 23, 2020 at 10:11 AM Xiaohan-Chen ***@***.***> wrote: Hi Ted, I came from the link website--https://clue.io/contest, which mentioned that an implementation of INFERENCE CHALLENGE was in cmapR. But I did not find the function about that in cmapR. I was wondering if that really implemented in cmapR or you know any other R packages implement it? Thank you, Chen — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#56>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAO6F322YADINFIKGOAVUQDROBEB5ANCNFSM4MPCYTPA> .

[XiaohanChen97]

Hi Chen, Sorry for the confusion. The inference contest code is in cmapR, but it is not on the master branch. It's on a separate branch called 'inf-contest'. Here is the link to the relevant code on that branch: https://github.com/cmap/cmapR/tree/inf-contest/contests Best, Ted
…
On Thu, Apr 23, 2020 at 10:11 AM Xiaohan-Chen @.***> wrote: Hi Ted, I came from the link website--https://clue.io/contest, which mentioned that an implementation of INFERENCE CHALLENGE was in cmapR. But I did not find the function about that in cmapR. I was wondering if that really implemented in cmapR or you know any other R packages implement it? Thank you, Chen — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#56>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAO6F322YADINFIKGOAVUQDROBEB5ANCNFSM4MPCYTPA .

That really helps me a lot! Thank you very much!