Connectivity Map at the Broad Institute

Repositories

• morpheus.js

  JavaScript matrix visualization and analysis

  visualization javascript chart statistics heatmap matrix
  JavaScript BSD-3-Clause 15 41 4 (1 issue needs help) 1 Updated Feb 24, 2021

• dockerized_mts

  Forked from broadinstitute/dockerized_mts
  R 2 1 0 0 Updated Feb 19, 2021

• CTG_pipeline
  R 0 1 0 0 Updated Feb 2, 2021

• cmapBQ
  Python MIT 1 1 1 0 Updated Jan 12, 2021

• cmapM

  Connectivity Map analysis in MATLAB
  C BSD-3-Clause 14 26 4 0 Updated Jan 8, 2021

• cmapR

  R

  bioinformatics bioconductor cmap
  R BSD-3-Clause 21 48 7 0 Updated Jan 6, 2021

• psp

  Python scripts for data processing and analysis of P100 and GCP data

  python proteomics cmappy
  Python BSD-3-Clause 7 7 4 0 Updated Dec 23, 2020

• lincs-workshop-2020

  CMap Notebooks for LINCS 2020 Workshop
  Jupyter Notebook 3 8 0 0 Updated Dec 18, 2020

• deconv

  Repo for paper: "Improving Deconvolution Methods in Biology"
  R 0 0 0 0 Updated Nov 3, 2020

• morpheus.R

  R interface to morpheus.js heatmap widget

  visualization javascript chart r heatmap
  R BSD-3-Clause 9 26 3 0 Updated Oct 22, 2020

• gene_deconvolution_challenge

  Source code for the top finishers from the CMap Gene Deconvolution challenge
  Python 0 0 0 0 Updated Oct 22, 2020

• mts_biomarker
  R 0 1 0 0 Updated Oct 14, 2020

• merino

  Pre-publication data flow for PRISM multiplex cell viability assay
  Python BSD-3-Clause 1 3 3 0 Updated Jun 2, 2020

• cmapPy

  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

  gene genetics pandas gct gctx grp
  Python BSD-3-Clause 49 62 10 0 Updated Apr 3, 2020

• sig_xicon

  sig_xicon jobs on aws batch
  JavaScript 0 0 0 0 Updated Feb 14, 2020

• morpheus-export

  export static heat maps using Morpheus.js
  JavaScript BSD-3-Clause 0 2 0 0 Updated Nov 14, 2019

• jupyterhub
  HTML 0 0 0 0 Updated Nov 13, 2019

• cmap_notebooks

  CMAP public jupyter notebooks
  Jupyter Notebook 1 0 0 0 Updated Nov 13, 2019

• GCT2BQ
  JavaScript 0 0 0 0 Updated Sep 14, 2019

• jupyter-docker
  Dockerfile 0 0 0 0 Updated Sep 12, 2019

• queue_manager
  Python 0 0 0 0 Updated Apr 1, 2019

• dockers
  JavaScript 1 0 0 0 Updated Dec 12, 2018

• cmapJ

  Connectivity Map software for Java
  Java BSD-3-Clause 0 0 0 0 Updated Dec 1, 2017

• geoscripts
  Shell 0 0 0 0 Updated Aug 2, 2017

• barista

  CMap javascript components (DEPRECATED)
  HTML GPL-2.0 1 0 30 0 Updated Jul 28, 2017

• l1ktools Archived

  Deprecated - see cmapM, cmapPy and cmapR for CMap and L1000 code
  64 47 1 4 Updated May 18, 2017

• pdex
  HTML 0 0 0 0 Updated May 11, 2017

• gsea_wrapper
  Java 0 0 0 0 Updated Oct 24, 2015