Annotating level 3 or level 4 data

[Joker-Jerome]

Hi there,

Thanks for sharing the code and it works perfectly for me in terms of manipulating the level 5 data. When I was trying to use the level 3 or level 4 data, it seems that I couldn't find a good source for the annotation file. I was wondering where I can find those annotation files so that I can use other levels of data.

Thanks in advance!

Best,
Jerome

[tnat1031]

Hi Jerome, You can find that annotation file in our GEO repository: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92742 The file GSE92742_Broad_LINCS_inst_info.txt.gz contains the experimental (column) annotations for level 3 and 4 data. Best, Ted

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On Wed, May 6, 2020 at 10:37 AM Zhaolong(Jerome) Yu < ***@***.***> wrote: Hi there, Thanks for sharing the code and it works perfectly for me in terms of manipulating the level 5 data. When I was trying to use the level 3 or level 4 data, it seems that I couldn't find a good source for the annotation file. I was wondering where I can find those annotation files so that I can use other levels of data. Thanks in advance! Best, Jerome — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#57>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAO6F3YG46V46RGJWR6YFPDRQFY2VANCNFSM4M2P4XPA> .