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The behaviour of
rhdf5::H5close()
has changed as a result of updating the underlying HDF5 library. InvokingH5close()
now not only closes any open object handles, but also shuts down the C-library so nothing works after, rending it fairly useless. The functionality to close any open objects can now be achieved withh5closeAll()
.The changes in this pull request should make the affected cmapR functions compatible with both the 'old' version of rhdf5 e.g. versions < 2.23.0, and also the changed behaviour in rhdf5 >= 2.23.0.