Skip to content

Call gc() after saving state scores #232

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Apr 5, 2022
Merged

Call gc() after saving state scores #232

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 6 additions & 3 deletions Report/create_reports.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -139,6 +139,8 @@ for (signal_name in signals) {
check_for_missing_forecasters(state_predictions, forecasters, "state", signal_name, output_dir)
}

save_score_errors <- list()

## Score predictions
print("Evaluating state forecasts")
geo_type <- "state"
Expand All @@ -147,20 +149,21 @@ state_scores <- evaluate_covid_predictions(state_predictions,
geo_type = geo_type
)

save_score_errors <- list()

for (signal_name in signals) {
status <- save_score_cards_wrapper(state_scores, geo_type, signal_name, output_dir)
if (status != 0) {
save_score_errors[paste(signal_name, geo_type)] <- status
}
}

rm(state_scores)
gc()

print("Evaluating national forecasts")
# TODO: When this function was created, COVIDcast did not return national level
# data, and CovidHubUtils was used instead. We could now switch to COVIDcast,
# but COVIDcast and CovidHubUtils don't produce exactly the same data. This
# requires more investigation. Also using CovidHubUtils might be faster.
# requires more investigation. Not using `evalcast` is also faster.
geo_type <- "nation"
nation_scores <- evaluate_chu(nation_predictions, signals, err_measures)

Expand Down