v0.4.5

• Added create_5tt to parcellationtools to generate MRtrix3 5TT images
• Added a method to merge the cortical gray matter with the white matter adjacent to the cortex, and used the merged image to build the 5TT image
• Added the apply_affine method to the Surface, PointCloud and Tractogram classes, with an inplace option
• Added connected components detection for binary images
• Added the option to interpolate on Parcellation objects
• Added a method to compare dictionaries
• Added the process_subject function to bidstools
• Added the brain_pos_col and cb_pos functions to build_visualization_layout
• Added the ventral DC to the list of subcortical regions
• Added examples for create_5tt, merge_ctx_wm, apply_cras and apply_affine
• Refactored the visualizationtools module and fixed several plotting errors
• Renamed the force parameter to overwrite in all the functions and methods writing files
• Renamed the transform method of the PointCloud class to apply_affine
• Fixed the apply_cras method of the Surface class
• Fixed a bug in the subject selection of bidstools
• Fixed the line spacing, the append handling and the header lines of export_to_lutctab in colorstools
• Fixed the anchors, the links and the FreeSurfer paths of the notebooks
• Silenced the tight_layout warning of create_carpet_plot
• Raised the minimum Python version to 3.11 and adopted the built-in generics and the union operator in the type hints

Full Changelog: v0.4.4...v0.4.5