2021-podar-gathertax

Comparisons of protein and DNA grist done on SRR606249, the data set from Shakya et al. 2013, lovingly named "podar".

These two notebooks generate the initial data frames with the taxonomic info for protein and DNA, respectively:

This notebook compares the DNA and protein results:

See dib-lab/genome-grist#40 for more info and discussion.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
outputs.podar.protein/genbank		outputs.podar.protein/genbank
outputs/genbank		outputs/genbank
.gitignore		.gitignore
README.md		README.md
compare-dna-prot-tax.ipynb		compare-dna-prot-tax.ipynb
gathergram-podar-dna.ipynb		gathergram-podar-dna.ipynb
gathergram-podar-protein.ipynb		gathergram-podar-protein.ipynb
podar-dna-class.csv		podar-dna-class.csv
podar-dna-family.csv		podar-dna-family.csv
podar-dna-genus.csv		podar-dna-genus.csv
podar-dna-order.csv		podar-dna-order.csv
podar-dna-phylum.csv		podar-dna-phylum.csv
podar-dna-species.csv		podar-dna-species.csv
podar-dna-superkingdom.csv		podar-dna-superkingdom.csv
podar-protein-class.csv		podar-protein-class.csv
podar-protein-family.csv		podar-protein-family.csv
podar-protein-genus.csv		podar-protein-genus.csv
podar-protein-order.csv		podar-protein-order.csv
podar-protein-phylum.csv		podar-protein-phylum.csv
podar-protein-species.csv		podar-protein-species.csv
podar-protein-superkingdom.csv		podar-protein-superkingdom.csv

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