Search (very) large public databases with sourmash sketches

Run it like so:

snakemake -s magsearch.snakefile --configfile config.yml -j 32

Needs ~40 GB of RAM, 32 cores.

To run "integration" test on farm, use:

snakemake -s magsearch.snakefile -j 2 --configfile config-test.yml

This repository was originally forked from https://github.com/sourmash-bio/sra_search.

This software is under the AGPL license. Please see LICENSE.txt.

Authors:

Luiz Irber N. Tessa Pierce-Ward C. Titus Brown

Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
bin		bin
env		env
query.example.sigs		query.example.sigs
tests		tests
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
Makefile		Makefile
README.md		README.md
catalog.sub		catalog.sub
config-test.yml		config-test.yml
config.yml		config.yml
magsearch.snakefile		magsearch.snakefile
query.example.txt		query.example.txt