My container update #120
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build containers from conda environments | |
| on: | |
| pull_request: | |
| paths: | |
| - 'container/*/*.yml' | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| outputs: | |
| matrix: ${{ steps.export-directories.outputs.matrix }} | |
| all_changed_files_count: ${{ steps.changed-directories.outputs.all_changed_files_count }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get branch name | |
| id: branch-name | |
| uses: tj-actions/branch-names@v7 | |
| - name: Get SHA of last commit to main branch | |
| uses: nrwl/nx-set-shas@v3 | |
| id: last_successful_commit_pull_request | |
| with: | |
| main-branch-name: ${{ steps.branch-name.outputs.base_ref_branch }} | |
| - name: Get changed directories | |
| id: changed-directories | |
| uses: tj-actions/changed-files@v36 | |
| with: | |
| base_sha: ${{ steps.last_successful_commit_pull_request.outputs.base }} | |
| dir_names: true | |
| dir_names_exclude_current_dir: true | |
| json: true | |
| files: container/*/*.yml | |
| - name: Export changed directories | |
| if: steps.changed-directories.outputs.all_changed_files_count > 0 | |
| id: export-directories | |
| run: | | |
| echo "matrix={\"context\":${{ steps.changed-directories.outputs.all_changed_files }}}" > /tmp/changed_directories.json | |
| echo "matrix={\"context\":${{ steps.changed-directories.outputs.all_changed_files }}}" >> "$GITHUB_OUTPUT" | |
| - name: Upload changed directories | |
| if: steps.changed-directories.outputs.all_changed_files_count > 0 | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: changed_directories_${{ github.event.pull_request.head.sha }} | |
| path: /tmp/changed_directories.json | |
| docker_container: | |
| needs: setup | |
| if: needs.setup.outputs.all_changed_files_count > 0 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJSON(needs.setup.outputs.matrix) }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup up docker buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Get basename | |
| id: context_basename | |
| run: echo "basename=$(basename ${{ matrix.context }})" >> "$GITHUB_OUTPUT" | |
| - name: Build and export docker containers | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: ${{ matrix.context }} | |
| file: .github/docker.df | |
| tags: ${{ steps.context_basename.outputs.basename }}_docker:latest | |
| outputs: type=docker,dest=/tmp/${{ steps.context_basename.outputs.basename }}_docker.tar | |
| apptainer_container: | |
| needs: setup | |
| if: needs.setup.outputs.all_changed_files_count > 0 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJSON(needs.setup.outputs.matrix) }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: containers | |
| create-args: apptainer | |
| generate-run-shell: true | |
| - name: Get basename | |
| id: context_basename | |
| run: echo "basename=$(basename ${{ matrix.context }})" >> "$GITHUB_OUTPUT" | |
| - name: Build apptainer containers | |
| shell: micromamba-shell {0} | |
| run: | | |
| pushd ${{ matrix.context}}; \ | |
| apptainer build /tmp/${{ steps.context_basename.outputs.basename }}_apptainer.sif ${{ github.workspace }}/.github/apptainer.def; \ | |
| popd |