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PIF_CO_FT_model
img
LICENSE.txt
P2011_parameter_call.m
README.md
allocation.m
assimilation_MF_clock.m
calculate_area.m
calculate_root_shoot_sink_variation.m
calculate_sugar_acc.m
check_plot.m
circadian_module.m
determine_current_leaf_number.m
flowering_threshold_test.m
ini_carbon_balance_MF.m
issf.m
mainres.m
model_simulation_test_script.m
organdemand.m
parameter.mat
phen.m
photosynthesis.m
plant_carbon_balance_MF_clock.m
plot_comparison_to_experimental_data.m
run_sensitivity_analysis.m
run_simulation.m
simulate_FM.m
simulation_output_Col0.mat
starch_module.m
starch_parameter_call.m
test_phenology.m
translocation.m
weather.mat

README.md

frameworkmodel

This repository contains code to simulate the Arabidopsis Framework model v2, described in Chew et al, 2017 [https://doi.org/10.1101/105437].

The function "simulate_FM.m" runs the model. It is called in the script "run_model_simulation", which also sets up model parameters.

The Web Application used the run_simulation.m version to run the model. This allows period environment data to be used.

Overview of module/function heirarchy

My image

License

This software is licensed under the Apache 2.0 license (see LICENSE.txt).

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