frameworkmodel

This repository contains code to simulate the Arabidopsis Framework model v2, described in Chew et al, 2017 [https://doi.org/10.1101/105437].

The function "simulate_FM.m" runs the model. It is called in the script "run_model_simulation", which also sets up model parameters.

The Web Application used the run_simulation.m version to run the model. This allows period environment data to be used.

Overview of module/function heirarchy

This software is licensed under the Apache 2.0 license (see LICENSE.txt).

Name		Name	Last commit message	Last commit date
Latest commit History 109 Commits
PIF_CO_FT_model		PIF_CO_FT_model
img		img
LICENSE.txt		LICENSE.txt
P2011_parameter_call.m		P2011_parameter_call.m
README.md		README.md
allocation.m		allocation.m
assimilation_MF_clock.m		assimilation_MF_clock.m
calculate_area.m		calculate_area.m
calculate_root_shoot_sink_variation.m		calculate_root_shoot_sink_variation.m
calculate_sugar_acc.m		calculate_sugar_acc.m
check_plot.m		check_plot.m
circadian_module.m		circadian_module.m
determine_current_leaf_number.m		determine_current_leaf_number.m
flowering_threshold_test.m		flowering_threshold_test.m
ini_carbon_balance_MF.m		ini_carbon_balance_MF.m
issf.m		issf.m
mainres.m		mainres.m
model_simulation_test_script.m		model_simulation_test_script.m
organdemand.m		organdemand.m
parameter.mat		parameter.mat
phen.m		phen.m
photosynthesis.m		photosynthesis.m
plant_carbon_balance_MF_clock.m		plant_carbon_balance_MF_clock.m
plot_comparison_to_experimental_data.m		plot_comparison_to_experimental_data.m
run_sensitivity_analysis.m		run_sensitivity_analysis.m
run_simulation.m		run_simulation.m
simulate_FM.m		simulate_FM.m
simulation_output_Col0.mat		simulation_output_Col0.mat
starch_module.m		starch_module.m
starch_parameter_call.m		starch_parameter_call.m
test_phenology.m		test_phenology.m
translocation.m		translocation.m
weather.mat		weather.mat