updates

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,34 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

README.md

@@ -38,7 +38,7 @@ devtools::install_github("danymukesha/BioGA")
 #> ggplot2     (3.5.0   -> 3.5.1  ) [CRAN]
 #> Skipping 17 packages ahead of CRAN: BiocGenerics, graph, S4Arrays, IRanges, S4Vectors, MatrixGenerics, GenomeInfoDbData, zlibbioc, XVector, GenomeInfoDb, RBGL, Biobase, DelayedArray, GenomicRanges, BiocStyle, biocViews, SummarizedExperiment
 #> Installing 16 packages: fs, fastmap, cachem, xfun, tinytex, knitr, htmltools, bslib, rmarkdown, matrixStats, munsell, farver, BiocManager, bookdown, gtable, ggplot2
-#> Installing packages into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp_libpath8488528329e2'
+#> Installing packages into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp_libpath848868d23488'
 #> (as 'lib' is unspecified)
 #> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
 #>   cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3/PACKAGES'
@@ -64,9 +64,9 @@ devtools::install_github("danymukesha/BioGA")
 #> package 'ggplot2' successfully unpacked and MD5 sums checked
 #> 
 #> The downloaded binary packages are in
-#>  C:\Users\dany.mukesha\AppData\Local\Temp\RtmpWuKbDY\downloaded_packages
+#>  C:\Users\dany.mukesha\AppData\Local\Temp\RtmpArcJMj\downloaded_packages
 #> ── R CMD build ─────────────────────────────────────────────────────────────────
-#>       ✔  checking for file 'C:\Users\dany.mukesha\AppData\Local\Temp\RtmpWuKbDY\remotes99a020a46bb9\danymukesha-BioGA-9b9a1cc/DESCRIPTION' (776ms)
+#>          checking for file 'C:\Users\dany.mukesha\AppData\Local\Temp\RtmpArcJMj\remotes15e82c92423\danymukesha-BioGA-23ecb91/DESCRIPTION' ...  ✔  checking for file 'C:\Users\dany.mukesha\AppData\Local\Temp\RtmpArcJMj\remotes15e82c92423\danymukesha-BioGA-23ecb91/DESCRIPTION' (343ms)
 #>       ─  preparing 'BioGA':
 #>    checking DESCRIPTION meta-information ...     checking DESCRIPTION meta-information ...   ✔  checking DESCRIPTION meta-information
 #> ─  cleaning src
@@ -76,6 +76,6 @@ devtools::install_github("danymukesha/BioGA")
 #>       ─  building 'BioGA_0.99.5.tar.gz'
 #>      
 #> 
-#> Installing package into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp_libpath8488528329e2'
+#> Installing package into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp_libpath848868d23488'
 #> (as 'lib' is unspecified)
 ```