Repository associated with the publication:
Dynamics of microbial communities during the removal of copper and zinc in a sulfate-reducing bioreactor with a limestone pre-column system
Aracely Zambrano-Romero, Dario X. Ramirez-Villacis, Gabriel Trueba, Reyes Sierra-Alvarez, Antonio Leon-Reyes, Paul Cardenas, Valeria Ochoa-Herrera
DOI: https://doi.org/10.3390/ijerph19031484
If you need futher information please contact dxramirez@usfq.edu.ec
This repository contains the amplicon sequencing raw reads and the count tables obtained after the processing of the amplicon sequence data.
Contains the .fastq.gz files with the forward and reverse reads for the V3V4 16s rDNA gene region. Also, it includes the asociated metadata file.
count_table_raw.csv: CSV table that contains the raw count table of the ASV obtained for the V3V4 region of the 16s rRNA gene.
count_table_rarefied.csv: CSV table that contains the rarefied count table of the ASV obtained for the V3V4 region of the 16s rRNA gene.
taxonomy.csv: CSV table that contains the taxonomy annotation of each ASV sequence.
metadata.csv: CSV table that contains the associated information to each sample used in the SynCom experiment.
relative_abundance.csv: CSV table that contains the realtive abundance of each ASV and the clasification used for Figure 3b, Figure 4 and Figure 5.