grafting_rose_microbiome

Repository associated with the publication:

Influence of grafting and scion genotype on rootstock rhizosphere microbiome assembly in Rosa sp. 'Natal Brier'

Dario X. Ramirez-Villacis, Pablo Erazo-Garcia, Juan Quijia-Pillajo, Sol Llerena-Llerena, Noelia Barriga-Medina, Corbin D. Jones and Antonio Leon-Reyes

https://doi.org/XXXXX

If you need futher information please contact dxramirez@usfq.edu.ec

This repository contains the count tables obtained after the processing of the amplicon sequence data. The amplicon sequencing raw reads are available at NCBI Sequence Read Archive (Project PRJNA893836).

Raw_data

count_table_16s_raw.csv: CSV table that contains the raw count table of the ASV obtained for the V3V4 region of the 16s rRNA gene.

count_table_16s_rarefied.csv: CSV table that contains the rarefied count table of the ASV obtained for the V3V4 region of the 16s rRNA gene.

taxonomy_16s.csv: CSV table that contains the taxonomy annotation for the ASV obtained for the V3V4 region of the 16s rRNA gene.

count_table_ITS_raw.csv: CSV table that contains the raw count table of the ASV obtained for the ITS region.

count_table_ITS_rarefied.csv: CSV table that contains the rarefied count table of the ASV obtained for the ITS region.

taxonomy_ITS.csv: CSV table that contains the taxonomy annotation for the ASV obtained for the ITS region.

faprotax_counts.csv: CSV table that contains the counts obtained using the FAPROTAX tool.

funguild_counts.csv: CSV table that contains the counts obtained using the FunGuild tool.

metadata_16s.csv: CSV table that contains the associated information to each sample used.

metadata_ITS.csv: CSV table that contains the associated information to each sample used.