Merged shared exclusion #15
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…alth#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues
deepsonshrestha
commented
Apr 12, 2024
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| -- where concept_name in ( | ||
| -- 'office visit' | ||
| -- , 'home healthcare services' | ||
| -- , 'preventive care services established office visit, 18 and up' | ||
| -- , 'preventive care services initial office visit, 18 and up' | ||
| -- , 'annual wellness visit' | ||
| -- , 'emergency department evaluation and management visit' | ||
| -- , 'emergency department visit' | ||
| -- ) |
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| -- where lower(encounter_type) in ( | ||
| -- 'home health' | ||
| -- , 'office visit' | ||
| -- , 'outpatient' | ||
| -- , 'outpatient rehabilitation' | ||
| -- , 'acute inpatient' | ||
| -- ) |
| , max_date | ||
| , floor({{ datediff('birth_date', 'e.max_date', 'hour') }} / 8760.0) as max_age | ||
| , qualifying_types | ||
| from {{ref('quality_measures__stg_core__patient')}} p |
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instead of aliasing, using patient instead
| where lower(visit_codes.concept_name) = 'fracture procedures' | ||
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| ) | ||
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remove these lines
| , code_system | ||
| , concept_name | ||
| from {{ ref('quality_measures__value_sets') }} | ||
| ) |
| from {{ ref('quality_measures__value_sets') }} | ||
| ) | ||
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| , osteo_procedurecodes as ( |
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rename this to osteo_procedure_codes
| , 'ct bone density axial' | ||
| , 'peripheral dual-energy x-ray absorptiometry (dxa)' | ||
| ) | ||
| ) |
| , source_code_type | ||
| , ndc_code | ||
| , rxnorm_code | ||
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remove this whiteline
| from {{ref('quality_measures__stg_core__medication')}} as medications | ||
| inner join osteo_rx_codes | ||
| on medications.source_code = osteo_rx_codes.code | ||
| and medications.source_code_type = osteo_rx_codes.code_system |
deepsonshrestha
added a commit
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Apr 18, 2024
…lth#436) * feat: changed exclusions * feat: shared exclusions for hospice and snp * feat: shared exclusions for frailty * feat: added common exclusion models and materialized as tables * docs: updated schema names * feat: updated the project version * refactor: changed the schema names and removed older excluion logic * docs: updated the tuva version * feat: updated the seed files * feat: deno models * feat: created denominator model and updated perf period * feat: updated both deno conditions * docs: updated the docs and specified the schema * osteo_numerator_procedure_only * schema definition for nqf0053 numerator in yml * changed codes from fracture diagnoses to procedures * pharmacy_claims-numerator initial * fix: refactored the source tables and updated the lookback period logic * feat: numerator from procedure and pharmacy_claims * minor: aesthetic changes * Add observation suspecting logic for HCC 48 - Morbid Obesity (tuva-health#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues * minor: denominator encounter filters * feat: updated encounter type * feat: numerator untested * feat: numerator with recorded date from deno * feat: updated emergency encounter type * feat: created custom exclusions for NQF0053 * docs: updated the docs and specified the schema * revert: reverted ED in encounter type * feat: numerator and denominator * feat: added lookback period for december * docs: 0053 numerator column description added in yml * minor: lookback fieldname change * feat: 0053 long model and docs * docs: staging medication table column update yml * refactor: combined two same ctes into one * minor: numerator * feat: created exclusion model * feat: updated long table * feat: exclusions_utsav * docs: exclusion yaml * feat: exclusion with shared exclusion name updated * feat: added final exclusion table * feat: added nqf0053 in summary tables * docs: removed unused columns * fix: removed unused columns in NQf0059 diabetes * docs: updated the tuva project version to 0.7.17 * minor: #15 pull request aesthetic changes * docs: updated seed with rx code ndc * feat: nqf0053 PR changes * feat: denominator PR changes Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * docs: tuva version update * feat: exclusion PR changes --------- Co-authored-by: Deepson Shrestha <shresthadeepson317@gmail.com> Co-authored-by: Deepson Shrestha <53638102+deepsonshrestha@users.noreply.github.com> Co-authored-by: Sarah Morgan <sarah@tuvahealth.com>
deepsonshrestha
added a commit
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Apr 18, 2024
…lth#436) * feat: changed exclusions * feat: shared exclusions for hospice and snp * feat: shared exclusions for frailty * feat: added common exclusion models and materialized as tables * docs: updated schema names * feat: updated the project version * refactor: changed the schema names and removed older excluion logic * docs: updated the tuva version * feat: updated the seed files * feat: deno models * feat: created denominator model and updated perf period * feat: updated both deno conditions * docs: updated the docs and specified the schema * osteo_numerator_procedure_only * schema definition for nqf0053 numerator in yml * changed codes from fracture diagnoses to procedures * pharmacy_claims-numerator initial * fix: refactored the source tables and updated the lookback period logic * feat: numerator from procedure and pharmacy_claims * minor: aesthetic changes * Add observation suspecting logic for HCC 48 - Morbid Obesity (tuva-health#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues * minor: denominator encounter filters * feat: updated encounter type * feat: numerator untested * feat: numerator with recorded date from deno * feat: updated emergency encounter type * feat: created custom exclusions for NQF0053 * docs: updated the docs and specified the schema * revert: reverted ED in encounter type * feat: numerator and denominator * feat: added lookback period for december * docs: 0053 numerator column description added in yml * minor: lookback fieldname change * feat: 0053 long model and docs * docs: staging medication table column update yml * refactor: combined two same ctes into one * minor: numerator * feat: created exclusion model * feat: updated long table * feat: exclusions_utsav * docs: exclusion yaml * feat: exclusion with shared exclusion name updated * feat: added final exclusion table * feat: added nqf0053 in summary tables * docs: removed unused columns * fix: removed unused columns in NQf0059 diabetes * docs: updated the tuva project version to 0.7.17 * minor: #15 pull request aesthetic changes * docs: updated seed with rx code ndc * feat: nqf0053 PR changes * feat: denominator PR changes Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * docs: tuva version update * feat: exclusion PR changes --------- Co-authored-by: Deepson Shrestha <shresthadeepson317@gmail.com> Co-authored-by: Deepson Shrestha <53638102+deepsonshrestha@users.noreply.github.com> Co-authored-by: Sarah Morgan <sarah@tuvahealth.com>
deepsonshrestha
added a commit
that referenced
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Apr 18, 2024
…lth#436) * feat: changed exclusions * feat: shared exclusions for hospice and snp * feat: shared exclusions for frailty * feat: added common exclusion models and materialized as tables * docs: updated schema names * feat: updated the project version * refactor: changed the schema names and removed older excluion logic * docs: updated the tuva version * feat: updated the seed files * feat: deno models * feat: created denominator model and updated perf period * feat: updated both deno conditions * docs: updated the docs and specified the schema * osteo_numerator_procedure_only * schema definition for nqf0053 numerator in yml * changed codes from fracture diagnoses to procedures * pharmacy_claims-numerator initial * fix: refactored the source tables and updated the lookback period logic * feat: numerator from procedure and pharmacy_claims * minor: aesthetic changes * Add observation suspecting logic for HCC 48 - Morbid Obesity (tuva-health#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues * minor: denominator encounter filters * feat: updated encounter type * feat: numerator untested * feat: numerator with recorded date from deno * feat: updated emergency encounter type * feat: created custom exclusions for NQF0053 * docs: updated the docs and specified the schema * revert: reverted ED in encounter type * feat: numerator and denominator * feat: added lookback period for december * docs: 0053 numerator column description added in yml * minor: lookback fieldname change * feat: 0053 long model and docs * docs: staging medication table column update yml * refactor: combined two same ctes into one * minor: numerator * feat: created exclusion model * feat: updated long table * feat: exclusions_utsav * docs: exclusion yaml * feat: exclusion with shared exclusion name updated * feat: added final exclusion table * feat: added nqf0053 in summary tables * docs: removed unused columns * fix: removed unused columns in NQf0059 diabetes * docs: updated the tuva project version to 0.7.17 * minor: #15 pull request aesthetic changes * docs: updated seed with rx code ndc * feat: nqf0053 PR changes * feat: denominator PR changes Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * docs: tuva version update * feat: exclusion PR changes --------- Co-authored-by: Deepson Shrestha <shresthadeepson317@gmail.com> Co-authored-by: Deepson Shrestha <53638102+deepsonshrestha@users.noreply.github.com> Co-authored-by: Sarah Morgan <sarah@tuvahealth.com>
utsavpaudel
added a commit
that referenced
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May 2, 2024
…va-health#440) * feat: changed exclusions * feat: shared exclusions for hospice and snp * feat: shared exclusions for frailty * feat: added common exclusion models and materialized as tables * docs: updated schema names * feat: updated the project version * refactor: changed the schema names and removed older excluion logic * docs: updated the tuva version * feat: updated the seed files * feat: deno models * feat: created denominator model and updated perf period * feat: updated both deno conditions * docs: updated the docs and specified the schema * osteo_numerator_procedure_only * schema definition for nqf0053 numerator in yml * changed codes from fracture diagnoses to procedures * pharmacy_claims-numerator initial * fix: refactored the source tables and updated the lookback period logic * feat: numerator from procedure and pharmacy_claims * minor: aesthetic changes * Add observation suspecting logic for HCC 48 - Morbid Obesity (tuva-health#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues * minor: denominator encounter filters * feat: updated encounter type * feat: numerator untested * feat: numerator with recorded date from deno * feat: updated emergency encounter type * feat: created custom exclusions for NQF0053 * docs: updated the docs and specified the schema * revert: reverted ED in encounter type * feat: numerator and denominator * feat: added lookback period for december * docs: 0053 numerator column description added in yml * minor: lookback fieldname change * feat: 0053 long model and docs * docs: staging medication table column update yml * refactor: combined two same ctes into one * minor: numerator * feat: created exclusion model * feat: updated long table * feat: exclusions_utsav * docs: exclusion yaml * feat: exclusion with shared exclusion name updated * feat: added final exclusion table * feat: added nqf0053 in summary tables * docs: removed unused columns * fix: removed unused columns in NQf0059 diabetes * docs: updated the tuva project version to 0.7.17 * minor: #15 pull request aesthetic changes * docs: updated seed with rx code ndc * feat: nqf0053 PR changes * feat: added age and exclusion type for measure specific exclusion * feat: implemeted shared exclusion and refactored the code * docs: removed unused columns from schema.yml * feat: updated the exclusions table * docs: updated the columns * removed older files * feat: denominator PR changes Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * prune: removed unused frailty exclusion * docs: tuva version update * feat: exclusion PR changes * fix: shared palliative concept added * fix: Palliative care diagnosis added in nqf2372 exclusion * docs: updated fields of 2372_exclusions, pruned unused model description * feat: implemented shared exclusion for NQF2372 * fix: performance period issue * fix: nqf2372 exclusion's fields edits in long model * feat: updated palliative concept name according to value concept seed * feat: implemented shared exclusion logic * prune: removed unused exclusion tables and updated the docs * BUGFIX: Correct union logic for shared exclusions in Quality Measures (tuva-health#437) fix union logic * Add HCC suspecting logic for CKD (tuva-health#432) * adding staging model for lab result * adding intermediate models lab suspects * add lab suspects to final model * update package version and dbt docs * update data type for lab results * add data_source to join for egfr lab suspect logic * update package version and dbt docs * NQF0053 Osteoporosis Management in women who had a fracture (tuva-health#436) * feat: changed exclusions * feat: shared exclusions for hospice and snp * feat: shared exclusions for frailty * feat: added common exclusion models and materialized as tables * docs: updated schema names * feat: updated the project version * refactor: changed the schema names and removed older excluion logic * docs: updated the tuva version * feat: updated the seed files * feat: deno models * feat: created denominator model and updated perf period * feat: updated both deno conditions * docs: updated the docs and specified the schema * osteo_numerator_procedure_only * schema definition for nqf0053 numerator in yml * changed codes from fracture diagnoses to procedures * pharmacy_claims-numerator initial * fix: refactored the source tables and updated the lookback period logic * feat: numerator from procedure and pharmacy_claims * minor: aesthetic changes * Add observation suspecting logic for HCC 48 - Morbid Obesity (tuva-health#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues * minor: denominator encounter filters * feat: updated encounter type * feat: numerator untested * feat: numerator with recorded date from deno * feat: updated emergency encounter type * feat: created custom exclusions for NQF0053 * docs: updated the docs and specified the schema * revert: reverted ED in encounter type * feat: numerator and denominator * feat: added lookback period for december * docs: 0053 numerator column description added in yml * minor: lookback fieldname change * feat: 0053 long model and docs * docs: staging medication table column update yml * refactor: combined two same ctes into one * minor: numerator * feat: created exclusion model * feat: updated long table * feat: exclusions_utsav * docs: exclusion yaml * feat: exclusion with shared exclusion name updated * feat: added final exclusion table * feat: added nqf0053 in summary tables * docs: removed unused columns * fix: removed unused columns in NQf0059 diabetes * docs: updated the tuva project version to 0.7.17 * minor: #15 pull request aesthetic changes * docs: updated seed with rx code ndc * feat: nqf0053 PR changes * feat: denominator PR changes Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * docs: tuva version update * feat: exclusion PR changes --------- Co-authored-by: Deepson Shrestha <shresthadeepson317@gmail.com> Co-authored-by: Deepson Shrestha <53638102+deepsonshrestha@users.noreply.github.com> Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * Patch 0.7.17 (tuva-health#439) * docs: revert package version * fix: reorder columns * docs: update dbt docs * docs: update dbt docs * fix: remove trailing blank rows * BUGFIX: Correct union logic for shared exclusions in Quality Measures (tuva-health#437) fix union logic * Add HCC suspecting logic for CKD (tuva-health#432) * adding staging model for lab result * adding intermediate models lab suspects * add lab suspects to final model * update package version and dbt docs * update data type for lab results * add data_source to join for egfr lab suspect logic * update package version and dbt docs * NQF0053 Osteoporosis Management in women who had a fracture (tuva-health#436) * feat: changed exclusions * feat: shared exclusions for hospice and snp * feat: shared exclusions for frailty * feat: added common exclusion models and materialized as tables * docs: updated schema names * feat: updated the project version * refactor: changed the schema names and removed older excluion logic * docs: updated the tuva version * feat: updated the seed files * feat: deno models * feat: created denominator model and updated perf period * feat: updated both deno conditions * docs: updated the docs and specified the schema * osteo_numerator_procedure_only * schema definition for nqf0053 numerator in yml * changed codes from fracture diagnoses to procedures * pharmacy_claims-numerator initial * fix: refactored the source tables and updated the lookback period logic * feat: numerator from procedure and pharmacy_claims * minor: aesthetic changes * Add observation suspecting logic for HCC 48 - Morbid Obesity (tuva-health#429) * add new clinical concepts * add new observation models * add new observation models * add observation model to final list * update models yml * increment package version and update dbt docs * remove diabetes in pregnancy codes * fix observation staging and casting issues * minor: denominator encounter filters * feat: updated encounter type * feat: numerator untested * feat: numerator with recorded date from deno * feat: updated emergency encounter type * feat: created custom exclusions for NQF0053 * docs: updated the docs and specified the schema * revert: reverted ED in encounter type * feat: numerator and denominator * feat: added lookback period for december * docs: 0053 numerator column description added in yml * minor: lookback fieldname change * feat: 0053 long model and docs * docs: staging medication table column update yml * refactor: combined two same ctes into one * minor: numerator * feat: created exclusion model * feat: updated long table * feat: exclusions_utsav * docs: exclusion yaml * feat: exclusion with shared exclusion name updated * feat: added final exclusion table * feat: added nqf0053 in summary tables * docs: removed unused columns * fix: removed unused columns in NQf0059 diabetes * docs: updated the tuva project version to 0.7.17 * minor: #15 pull request aesthetic changes * docs: updated seed with rx code ndc * feat: nqf0053 PR changes * feat: denominator PR changes Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * docs: tuva version update * feat: exclusion PR changes --------- Co-authored-by: Deepson Shrestha <shresthadeepson317@gmail.com> Co-authored-by: Deepson Shrestha <53638102+deepsonshrestha@users.noreply.github.com> Co-authored-by: Sarah Morgan <sarah@tuvahealth.com> * Patch 0.7.17 (tuva-health#439) * docs: revert package version * fix: reorder columns * docs: update dbt docs * docs: update dbt docs * fix: remove trailing blank rows * feat: NQF2372 exclusion filtered * fix: syntax error * refactor: shared hospice palliative reorder * feat: added relevant concept names * refactor: changed to lowercase * docs: updated docs for NQF0034 * docs: 0034 yaml update * docs: updated the docs * docs: updated numerator for osteoporosis * docs: updated yaml for 0053 * Update dbt_project.yml * refactor: use existing cte for mastectomy * fix: made changes to age irrelvant fields * fix: shared exclusion acute inpatient filter * refactor: mastectomy exclusion segregated --------- Co-authored-by: utsavpaudel <utsavpaudel111@gmail.com> Co-authored-by: Sarah Morgan <sarah@tuvahealth.com>
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