Fail to run infer_trajectory(dataset, method()) on MAC

[subkhankul]

Hello,

I was happy to use dynverse on Mac with R3.6.0. in R-studio with Docker. After installation the latest version for Mac (4.1) the function infer_trajectory(dataset, method()) always requires Singularity:

model <- infer_trajectory(dataset, ti_scorpius())
Running singularity exec 'docker://dynverse/ti_scorpius:v1.0.0.01' echo hi
Error in rethrow_call(c_processx_exec, command, c(command, args), pty, :
cannot start processx process 'singularity' (system error 2, No such file or directory) @unix/processx.c:610 (processx_exec)
Type .Last.error.trace to see where the error occurred

I re-install all programs including Docker, still no luck. I also have problems to install Singularity for Mac.
Could you help, please?

Thank you in advance

[rcannood]

Could you try setting docker to the default runner?

library(babelwhale)
config <- create_docker_config()
set_default_config(config)

[subkhankul]

Thank you very much for your help, I am still having an error. "infer_trajectory(dataset, ti_method())" starts working, but doesn't make an object. [cid:d37d61be-927e-4b0c-bd10-4125185d3048] [cid:b12518dd-8c03-4bfd-b249-0bad4c33812b] Thank you, Tatiana Could you try setting docker to the default runner? library(babelwhale) config <- create_docker_config() set_default_config(config) — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#114 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFITIDPZLFJ4IBN2NBBIJALTXVWX7ANCNFSM5AGPFKUA>.