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Devel #24

Merged
merged 41 commits into from
Aug 22, 2018
Merged

Devel #24

merged 41 commits into from
Aug 22, 2018

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rcannood
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  • Cleaned up yml
  • Use CRAN ggplot2
  • Rework calculate_trajectory_dimred
  • Clean up plot_graph
  • Temporarily disabled codecov
  • Many many fixes

rcannood and others added 30 commits July 4, 2018 11:01
@rcannood
use CRAN ggplot2 again
aad1537
@rcannood
remove old travis settings
3f05cf4
@rcannood
init files not needed anymore
8de0c33
@rcannood
try cleaning travis.yml
b56ecbc
@rcannood
nice try but no cigar
6df557a
@zouter
fix ordering of milestones
2ebff62
@zouter
Merge branch 'devel' of github.com:dynverse/dynplot into devel
c1d9cd6
@zouter
rename task to dataset
e00ce17
@zouter
fix milestone coloring
2eec0cd
@zouter
get grouping if not provided
b22e6e3
@zouter
get grouping if not provided
5c07d5f
@rcannood
inherit plot_edge_flip from dyneval
0aca44a
@zouter
higher default iterations obviously
e312f42
@zouter
Merge branch 'devel' of github.com:dynverse/dynplot into devel
a72e8aa
@zouter
add margin if converging
dd3ff45
@rcannood
add udunits to systemrequirements
df07b5a
@zouter
remove perform dimred
0fe43a4
@zouter
Merge branch 'devel' of github.com:dynverse/dynplot into devel
63d5052
@rcannood
fix density colouring
2e3cee2
@zouter
fix plotting a toy vignette
c12fb89
@zouter
Merge branch 'devel' of github.com:dynverse/dynplot into devel
9bf14f9
@zouter
fix default milestones
3e71be5
@rcannood
new roxygen
03131ba
@zouter
latest roxygen
9f7a778
@zouter
Merge branch 'devel' of github.com:dynverse/dynplot into devel
41c081a
@rcannood
improve plot_graph: draw polygons between triangles instead of the fu…
f0037eb 
…ll divergence. change ordering of layers such that the divergence regions are plotted first and are this below everything else
@rcannood
remove old code
9748f9b
@rcannood
rename check_or_perform_dimred to calculate_trajectory_dimred
52109f8
@rcannood
outputs of calculate_trajectory_dimred were renamed
d80df2d
@rcannood
divergence dimred is now also included in calculate_trajectory_dimred
cfe79a1
@rcannood rcannood merged commit 2952d16 into master Aug 22, 2018
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2 participants
@rcannood @zouter