ekg / diatoms Public

contig ordering using linkage disequilibrium

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Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
neighborly-tour @ c325053		neighborly-tour @ c325053
.gitmodules		.gitmodules
README.md		README.md
aggregate_ggplot_raster.R		aggregate_ggplot_raster.R
aggregate_ggplot_raster_monotig.R		aggregate_ggplot_raster_monotig.R
aggregate_ggplot_raster_monotig_mega.R		aggregate_ggplot_raster_monotig_mega.R
ld-plot-any.R		ld-plot-any.R
ld-plot-any.square.R		ld-plot-any.square.R
ld-plot-any.square.special.R		ld-plot-any.square.special.R
ld-plot-any.triang.R		ld-plot-any.triang.R
monotig.mapping.txt		monotig.mapping.txt
order-vcf.py		order-vcf.py
plot-ld.sh		plot-ld.sh
readgroup.sh		readgroup.sh
render-tig-linkage-mean.sh		render-tig-linkage-mean.sh
render-tig-linkage.sh		render-tig-linkage.sh
samples.txt		samples.txt
shader-ld.py		shader-ld.py
tomahawk-base.sh		tomahawk-base.sh
tomahawk-monotig.sh		tomahawk-monotig.sh
tomahawk_aggregate_count_raster.R		tomahawk_aggregate_count_raster.R
tomahawk_aggregate_mean_raster.R		tomahawk_aggregate_mean_raster.R
uPseMul2.contig_order.plus_isolated.txt		uPseMul2.contig_order.plus_isolated.txt
uPseMul2.contig_order.txt		uPseMul2.contig_order.txt
vcfnulldotslashdot-clean		vcfnulldotslashdot-clean