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Erik, another minor fix to help vcflib compile on OSX:
* linking smithwaterman
ld: warning: option -s is obsolete and being ignored
ld: internal error: atom not found in symbolIndex(__ZNKSt3__16vectorINS_4pairIicEENS_9allocatorIS2_EEE8max_sizeEv) for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [smithwaterman] Error 1
Erik, another minor fix to help vcflib compile on OSX:
This is the error command:
It works if you remove the ",-s" in the LDFLAGS which I think in Linux/GCC just strips the symbol table.
LDFLAGS=-Wl,-s
=>LDFLAGS=-Wl
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