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@elkebir-group

El-Kebir Group

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  1. cnaviz cnaviz Public

    Jupyter Notebook 11 5

  2. SPhyR SPhyR Public

    Single-cell Phylogeny Reconstruction

    Brainfuck 8 3

  3. derna derna Public

    RNA sequence design for a target protein sequence

    C 8 2

  4. CloMu CloMu Public

    CloMu is a neural network based software for cancer phylogeny analysis.

    Python 5 1

  5. PhySigs PhySigs Public

    Phylogenetic inference of exposures of mutational signatures

    Jupyter Notebook 4 1

  6. doubletD doubletD Public

    Python 4 4

Repositories

Showing 10 of 56 repositories
  • Pharming Public

    Solves the clonal tree inference with copy numbers problem

    elkebir-group/Pharming’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 17, 2024
  • TRIBAL_Dandelion_Preprocess Public
    elkebir-group/TRIBAL_Dandelion_Preprocess’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 17, 2024
  • fastppm Public
    elkebir-group/fastppm’s past year of commit activity
    C++ 0 0 0 0 Updated Nov 6, 2024
  • mach2-viz Public

    Cancer Metastasis and Clonal History (2) visualizer and exploratory tool

    elkebir-group/mach2-viz’s past year of commit activity
    JavaScript 4 MIT 1 0 0 Updated Nov 4, 2024
  • derna Public

    RNA sequence design for a target protein sequence

    elkebir-group/derna’s past year of commit activity
    C 8 BSD-3-Clause 2 2 0 Updated Oct 30, 2024
  • MACH2 Public
    elkebir-group/MACH2’s past year of commit activity
    Python 2 0 0 0 Updated Oct 29, 2024
  • CNRein Public

    Single-Cell Copy Number Calling with Evolution-Aware Deep Reinforcement Learning

    elkebir-group/CNRein’s past year of commit activity
    Python 1 BSD-3-Clause 1 1 0 Updated Oct 16, 2024
  • clonesim Public

    Simulating clonal trees with segmental CNAs and SNVs

    elkebir-group/clonesim’s past year of commit activity
    C++ 2 0 0 0 Updated Oct 2, 2024
  • TRIBAL Public
    elkebir-group/TRIBAL’s past year of commit activity
    C 4 BSD-3-Clause 0 1 0 Updated Sep 11, 2024
  • Sapling Public
    elkebir-group/Sapling’s past year of commit activity
    Python 0 0 0 0 Updated Sep 9, 2024
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