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Remove infection class #140

Merged
merged 29 commits into from
Nov 21, 2023
Merged

Remove infection class #140

merged 29 commits into from
Nov 21, 2023

Commits on Nov 8, 2023

  1. Remove infection-class related files 

    Remove more infection-class related files
    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  2. Remove infection-class C++ header

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  3. Add model args in fn call for default model

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  4. Add model args in fn call for Vacamole model

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  5. Refactor ebola model to not use infection class

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  6. Use renamed rate params in model headers

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  7. Default and Vacamole args checker fns use rates not infection

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  8. Default no time dependence uses renamed rate

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  9. Model C++ src files use renamed rates

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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  10. Test files do not use infection-class

    @pratikunterwegs
    pratikunterwegs committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. Update function documentation with direct params

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  2. Update vignettes using default model

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  3. Correct parameter naming in Vacamole header

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  4. Update Vacamole and {finalsize} vignettes

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  5. Update ebola vignette

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  6. Update helper fn get_parameters()

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  7. Update NAMESPACE

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  8. Update ebola model docs with new parameters 

    Update ebola model default parameters
    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  9. Update RcppExports

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  10. Remove ebola model C++ implementation

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  11. Clean up ebola-Cpp related code

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  12. Remove test for prob_erlang_cpp

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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  13. Update parameter uncertainty vignette

    @pratikunterwegs
    pratikunterwegs committed Nov 9, 2023
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Commits on Nov 10, 2023

  1. Remove infection from time_dep vignette

    @pratikunterwegs
    pratikunterwegs committed Nov 10, 2023
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  2. Update and add function examples

    @pratikunterwegs
    pratikunterwegs committed Nov 10, 2023
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  3. Update documentation and wordlist

    @pratikunterwegs
    pratikunterwegs committed Nov 10, 2023
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  4. Remove unicode characters from fn docs

    @pratikunterwegs
    pratikunterwegs committed Nov 10, 2023
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  5. Make prob_discrete_erlang internal

    @pratikunterwegs
    pratikunterwegs committed Nov 10, 2023
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Commits on Nov 14, 2023

  1. Remove <infection> reference from README.Rmd

    @bahadzie
    bahadzie committed Nov 14, 2023
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