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etcdserver: ensure waitForApply sync with applyAll #7810

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merged 1 commit into from
Apr 25, 2017

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gyuho
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@gyuho gyuho commented Apr 25, 2017

Problem is:

Step1: etcdserver/raft.go's Ready process routine sends config-change entries via r.applyc <- ap (https://github.com/coreos/etcd/blob/master/etcdserver/raft.go#L193-L203)

Step2: etcdserver/server.go's *EtcdServer.run routine receives this via ap := <-s.r.apply() (https://github.com/coreos/etcd/blob/master/etcdserver/server.go#L735-L738)

StepA: Step1 proceeds without sync, right after sending r.applyc <- ap.

StepB: Step2 proceeds without sync, right after sched.Schedule(s.applyAll(&ep,&ap)).

StepC: etcdserver tries to sync with s.applyAll(&ep,&ap) by calling rh.waitForApply().

rh.waitForApply() waits for all pending jobs to finish in pkg/schedule
side. However, the order of StepA,StepB,StepC is not guaranteed. It
is possible that StepC happens first, and proceeds without waiting on
apply. And the restarting member comes back as a leader in single-node
cluster, when there is no synchronization between apply-layer and
config-change Raft entry apply. Confirmed with more debugging lines below,
only reproducible with slow CPU VM (~2 vCPU).

~:24.005397 I | etcdserver: starting server... [version: 3.2.0+git, cluster version: to_be_decided]

~:24.011136 I | etcdserver: [DEBUG] 29b2d24047a277df waitForApply before

~:24.011194 I | etcdserver: [DEBUG] 29b2d24047a277df starts wait for 0 pending jobs
~:24.011234 I | etcdserver: [DEBUG] 29b2d24047a277df finished wait for 0 pending jobs (current pending 0)

~:24.011268 I | etcdserver: [DEBUG] 29b2d24047a277df waitForApply after

~:24.011348 I | etcdserver: [DEBUG] [0] 29b2d24047a277df is scheduling conf change on 29b2d24047a277df
~:24.011396 I | etcdserver: [DEBUG] [1] 29b2d24047a277df is scheduling conf change on 5edf80e32a334cf0
~:24.011437 I | etcdserver: [DEBUG] [2] 29b2d24047a277df is scheduling conf change on e32e31e76c8d2678
~:24.011477 I | etcdserver: [DEBUG] 29b2d24047a277df scheduled conf change on 29b2d24047a277df
~:24.011509 I | etcdserver: [DEBUG] 29b2d24047a277df scheduled conf change on 5edf80e32a334cf0
~:24.011545 I | etcdserver: [DEBUG] 29b2d24047a277df scheduled conf change on e32e31e76c8d2678
~:24.012500 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 29b2d24047a277df before
~:24.013014 I | etcdserver/membership: added member 29b2d24047a277df [unix://127.0.0.1:2100515039] to cluster 9250d4ae34216949
~:24.013066 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 29b2d24047a277df after
~:24.013113 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 29b2d24047a277df after trigger
~:24.013158 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 5edf80e32a334cf0 before
~:24.013666 W | etcdserver: failed to send out heartbeat on time (exceeded the 10ms timeout for 11.964739ms)
~:24.013709 W | etcdserver: server is likely overloaded
~:24.013750 W | etcdserver: failed to send out heartbeat on time (exceeded the 10ms timeout for 12.057265ms)
~:24.013775 W | etcdserver: server is likely overloaded
~:24.013950 I | raft: 29b2d24047a277df is starting a new election at term 4
~:24.014012 I | raft: 29b2d24047a277df became candidate at term 5
~:24.014051 I | raft: 29b2d24047a277df received MsgVoteResp from 29b2d24047a277df at term 5
~:24.014107 I | raft: 29b2d24047a277df became leader at term 5
~:24.014146 I | raft: raft.node: 29b2d24047a277df elected leader 29b2d24047a277df at term 5

I am printing out the number of pending jobs before we call
sched.WaitFinish(0), and there was no pending jobs, so it returned
immediately (before we schedule applyAll).

This is the root cause to:

sched.WaitFinish(0) doesn't work when len(f.pendings)==0 and
f.finished==0. Config-change is the first job to apply, so
f.finished is 0 in this case.

f.finished monotonically increases, so we need WaitFinish(finished+1).
And finished must be the one before calling Schedule. This is safe
because Schedule(applyAll) is the only place adding jobs to sched.
Then scheduler waits on the single job of applyAll, by getting the
current number of finished jobs before sending Schedule.

Or just make it be blocked until applyAll routine triggers on the
config-change job. This patch just removes waitForApply, and
signal raftDone to wait until applyAll finishes applying entries.

Confirmed that it fixes the issue, as below:

~:43.198354 I | rafthttp: started streaming with peer 36cda5222aba364b (stream MsgApp v2 reader)

~:43.198740 I | etcdserver: [DEBUG] 3988bc20c2b2e40c waitForApply before

~:43.198836 I | etcdserver: [DEBUG] 3988bc20c2b2e40c starts wait for 0 pending jobs, 1 finished jobs
~:43.200696 I | integration: launched 3169361310155633349 ()
~:43.201784 I | etcdserver: [DEBUG] [0] 3988bc20c2b2e40c is scheduling conf change on 36cda5222aba364b
~:43.201884 I | etcdserver: [DEBUG] [1] 3988bc20c2b2e40c is scheduling conf change on 3988bc20c2b2e40c
~:43.201965 I | etcdserver: [DEBUG] [2] 3988bc20c2b2e40c is scheduling conf change on cf5d6cbc2a121727
~:43.202070 I | etcdserver: [DEBUG] 3988bc20c2b2e40c scheduled conf change on 36cda5222aba364b
~:43.202139 I | etcdserver: [DEBUG] 3988bc20c2b2e40c scheduled conf change on 3988bc20c2b2e40c
~:43.202204 I | etcdserver: [DEBUG] 3988bc20c2b2e40c scheduled conf change on cf5d6cbc2a121727
~:43.202444 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 36cda5222aba364b (request ID: 0) before
~:43.204486 I | etcdserver/membership: added member 36cda5222aba364b [unix://127.0.0.1:2100913646] to cluster 425d73f1b7b01674
~:43.204588 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 36cda5222aba364b (request ID: 0) after
~:43.204703 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 36cda5222aba364b (request ID: 0) after trigger
~:43.204791 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 3988bc20c2b2e40c (request ID: 0) before
~:43.205689 I | etcdserver/membership: added member 3988bc20c2b2e40c [unix://127.0.0.1:2101113646] to cluster 425d73f1b7b01674
~:43.205783 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 3988bc20c2b2e40c (request ID: 0) after
~:43.205929 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 3988bc20c2b2e40c (request ID: 0) after trigger
~:43.206056 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on cf5d6cbc2a121727 (request ID: 0) before
~:43.207353 I | etcdserver/membership: added member cf5d6cbc2a121727 [unix://127.0.0.1:2100713646] to cluster 425d73f1b7b01674
~:43.207516 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on cf5d6cbc2a121727 (request ID: 0) after
~:43.207619 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on cf5d6cbc2a121727 (request ID: 0) after trigger
~:43.207710 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished scheduled conf change on 36cda5222aba364b
~:43.207781 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished scheduled conf change on 3988bc20c2b2e40c
~:43.207843 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished scheduled conf change on cf5d6cbc2a121727
~:43.207951 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished wait for 0 pending jobs (current pending 0, finished 1)
~:43.208029 I | rafthttp: started HTTP pipelining with peer cf5d6cbc2a121727
~:43.210339 I | rafthttp: peer 3988bc20c2b2e40c became active
~:43.210435 I | rafthttp: established a TCP streaming connection with peer 3988bc20c2b2e40c (stream MsgApp v2 reader)
~:43.210861 I | rafthttp: started streaming with peer 3988bc20c2b2e40c (writer)

~:43.211732 I | etcdserver: [DEBUG] 3988bc20c2b2e40c waitForApply after

@gyuho gyuho force-pushed the sync-with-apply branch 2 times, most recently from 5a9df4b to 841ea77 Compare April 25, 2017 16:10
rh.waitForApply()
// +1 to sync with scheduled config-change job
// if already applied, return immediately without blocking
rh.waitForApply(finished + 1)
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Does waitForApply need to wait until the entire job is finished or only until the apply waiter is triggered? Instead of expanding the interface to be more dependent on the scheduler details, would raftDone <- struct{}{} work here? It'll block until applyAll calls s.applyWait.Trigger.

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@gyuho gyuho Apr 25, 2017

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Yeah scheduler-dependent function doesn't look good in there.
We only need to block until the trigger.

would raftDone <- struct{}{} work here

Do you mean

// https://github.com/coreos/etcd/blob/master/etcdserver/raft.go#L243
raftDone <- struct{}{}

if waitApply {
    raftDone <- struct{}{}
}

Then we can just delete the entire waitForApply field?

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Yeah, waitForApply can be removed if raftDone is enough to replace it.

@gyuho gyuho force-pushed the sync-with-apply branch 2 times, most recently from f8ab66d to 5b7da85 Compare April 25, 2017 17:13
Problem is:

`Step1`: `etcdserver/raft.go`'s `Ready` process routine sends config-change entries via `r.applyc <- ap` (https://github.com/coreos/etcd/blob/master/etcdserver/raft.go#L193-L203)

`Step2`: `etcdserver/server.go`'s `*EtcdServer.run` routine receives this via `ap := <-s.r.apply()` (https://github.com/coreos/etcd/blob/master/etcdserver/server.go#L735-L738)

`StepA`: `Step1` proceeds without sync, right after sending `r.applyc <- ap`.

`StepB`: `Step2` proceeds without sync, right after `sched.Schedule(s.applyAll(&ep,&ap))`.

`StepC`: `etcdserver` tries to sync with `s.applyAll(&ep,&ap)` by calling `rh.waitForApply()`.

`rh.waitForApply()` waits for all pending jobs to finish in `pkg/schedule`
side. However, the order of `StepA`,`StepB`,`StepC` is not guaranteed. It
is possible that `StepC` happens first, and proceeds without waiting on
apply. And the restarting member comes back as a leader in single-node
cluster, when there is no synchronization between apply-layer and
config-change Raft entry apply. Confirmed with more debugging lines below,
only reproducible with slow CPU VM (~2 vCPU).

```
~:24.005397 I | etcdserver: starting server... [version: 3.2.0+git, cluster version: to_be_decided]
~:24.011136 I | etcdserver: [DEBUG] 29b2d24047a277df waitForApply before
~:24.011194 I | etcdserver: [DEBUG] 29b2d24047a277df starts wait for 0 pending jobs
~:24.011234 I | etcdserver: [DEBUG] 29b2d24047a277df finished wait for 0 pending jobs (current pending 0)
~:24.011268 I | etcdserver: [DEBUG] 29b2d24047a277df waitForApply after
~:24.011348 I | etcdserver: [DEBUG] [0] 29b2d24047a277df is scheduling conf change on 29b2d24047a277df
~:24.011396 I | etcdserver: [DEBUG] [1] 29b2d24047a277df is scheduling conf change on 5edf80e32a334cf0
~:24.011437 I | etcdserver: [DEBUG] [2] 29b2d24047a277df is scheduling conf change on e32e31e76c8d2678
~:24.011477 I | etcdserver: [DEBUG] 29b2d24047a277df scheduled conf change on 29b2d24047a277df
~:24.011509 I | etcdserver: [DEBUG] 29b2d24047a277df scheduled conf change on 5edf80e32a334cf0
~:24.011545 I | etcdserver: [DEBUG] 29b2d24047a277df scheduled conf change on e32e31e76c8d2678
~:24.012500 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 29b2d24047a277df before
~:24.013014 I | etcdserver/membership: added member 29b2d24047a277df [unix://127.0.0.1:2100515039] to cluster 9250d4ae34216949
~:24.013066 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 29b2d24047a277df after
~:24.013113 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 29b2d24047a277df after trigger
~:24.013158 I | etcdserver: [DEBUG] 29b2d24047a277df applyConfChange on 5edf80e32a334cf0 before
~:24.013666 W | etcdserver: failed to send out heartbeat on time (exceeded the 10ms timeout for 11.964739ms)
~:24.013709 W | etcdserver: server is likely overloaded
~:24.013750 W | etcdserver: failed to send out heartbeat on time (exceeded the 10ms timeout for 12.057265ms)
~:24.013775 W | etcdserver: server is likely overloaded
~:24.013950 I | raft: 29b2d24047a277df is starting a new election at term 4
~:24.014012 I | raft: 29b2d24047a277df became candidate at term 5
~:24.014051 I | raft: 29b2d24047a277df received MsgVoteResp from 29b2d24047a277df at term 5
~:24.014107 I | raft: 29b2d24047a277df became leader at term 5
~:24.014146 I | raft: raft.node: 29b2d24047a277df elected leader 29b2d24047a277df at term 5
```

I am printing out the number of pending jobs before we call
`sched.WaitFinish(0)`, and there was no pending jobs, so it returned
immediately (before we schedule `applyAll`).

This is the root cause to:

- etcd-io#7595
- etcd-io#7739
- etcd-io#7802

`sched.WaitFinish(0)` doesn't work when `len(f.pendings)==0` and
`f.finished==0`. Config-change is the first job to apply, so
`f.finished` is 0 in this case.

`f.finished` monotonically increases, so we need `WaitFinish(finished+1)`.
And `finished` must be the one before calling `Schedule`. This is safe
because `Schedule(applyAll)` is the only place adding jobs to `sched`.
Then scheduler waits on the single job of `applyAll`, by getting the
current number of finished jobs before sending `Schedule`.

Or just make it be blocked until `applyAll` routine triggers on the
config-change job. This patch just removes `waitForApply`, and
signal `raftDone` to wait until `applyAll` finishes applying entries.

Confirmed that it fixes the issue, as below:

```
~:43.198354 I | rafthttp: started streaming with peer 36cda5222aba364b (stream MsgApp v2 reader)
~:43.198740 I | etcdserver: [DEBUG] 3988bc20c2b2e40c waitForApply before
~:43.198836 I | etcdserver: [DEBUG] 3988bc20c2b2e40c starts wait for 0 pending jobs, 1 finished jobs
~:43.200696 I | integration: launched 3169361310155633349 ()
~:43.201784 I | etcdserver: [DEBUG] [0] 3988bc20c2b2e40c is scheduling conf change on 36cda5222aba364b
~:43.201884 I | etcdserver: [DEBUG] [1] 3988bc20c2b2e40c is scheduling conf change on 3988bc20c2b2e40c
~:43.201965 I | etcdserver: [DEBUG] [2] 3988bc20c2b2e40c is scheduling conf change on cf5d6cbc2a121727
~:43.202070 I | etcdserver: [DEBUG] 3988bc20c2b2e40c scheduled conf change on 36cda5222aba364b
~:43.202139 I | etcdserver: [DEBUG] 3988bc20c2b2e40c scheduled conf change on 3988bc20c2b2e40c
~:43.202204 I | etcdserver: [DEBUG] 3988bc20c2b2e40c scheduled conf change on cf5d6cbc2a121727
~:43.202444 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 36cda5222aba364b (request ID: 0) before
~:43.204486 I | etcdserver/membership: added member 36cda5222aba364b [unix://127.0.0.1:2100913646] to cluster 425d73f1b7b01674
~:43.204588 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 36cda5222aba364b (request ID: 0) after
~:43.204703 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 36cda5222aba364b (request ID: 0) after trigger
~:43.204791 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 3988bc20c2b2e40c (request ID: 0) before
~:43.205689 I | etcdserver/membership: added member 3988bc20c2b2e40c [unix://127.0.0.1:2101113646] to cluster 425d73f1b7b01674
~:43.205783 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 3988bc20c2b2e40c (request ID: 0) after
~:43.205929 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on 3988bc20c2b2e40c (request ID: 0) after trigger
~:43.206056 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on cf5d6cbc2a121727 (request ID: 0) before
~:43.207353 I | etcdserver/membership: added member cf5d6cbc2a121727 [unix://127.0.0.1:2100713646] to cluster 425d73f1b7b01674
~:43.207516 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on cf5d6cbc2a121727 (request ID: 0) after
~:43.207619 I | etcdserver: [DEBUG] 3988bc20c2b2e40c applyConfChange on cf5d6cbc2a121727 (request ID: 0) after trigger
~:43.207710 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished scheduled conf change on 36cda5222aba364b
~:43.207781 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished scheduled conf change on 3988bc20c2b2e40c
~:43.207843 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished scheduled conf change on cf5d6cbc2a121727
~:43.207951 I | etcdserver: [DEBUG] 3988bc20c2b2e40c finished wait for 0 pending jobs (current pending 0, finished 1)
~:43.208029 I | rafthttp: started HTTP pipelining with peer cf5d6cbc2a121727
~:43.210339 I | rafthttp: peer 3988bc20c2b2e40c became active
~:43.210435 I | rafthttp: established a TCP streaming connection with peer 3988bc20c2b2e40c (stream MsgApp v2 reader)
~:43.210861 I | rafthttp: started streaming with peer 3988bc20c2b2e40c (writer)
~:43.211732 I | etcdserver: [DEBUG] 3988bc20c2b2e40c waitForApply after
```

Signed-off-by: Gyu-Ho Lee <gyuhox@gmail.com>
@heyitsanthony
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lgtm

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