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  1. SpacerPlacer SpacerPlacer Public

    ancestral reconstruction and likelihood analysis for CRISPR spacer arrays

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  2. goldfinder goldfinder Public

    Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships

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  3. AIMsetfinder AIMsetfinder Public

    AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.

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  4. panicmage panicmage Public

    panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.

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  5. ML_in_pop_gen ML_in_pop_gen Public

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  6. stdpopsim stdpopsim Public

    Forked from popsim-consortium/stdpopsim

    A library of standard simulation models for msprime

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