curate-bids

Flywheel Gear that curates files within a Flywheel project according to BIDS Spec

Build the Image

To build the image:

git clone https://github.com/flywheel-apps/curate-bids
cd curate-bids
docker build -t flywheel/curate-bids .

Run the Image Locally

The BIDS curation gear can be run locally with the following command.

docker run -it --rm \
    -v /path/to/config:/flywheel/v0/config.json \
    flywheel/curate-bids

The -v flag in the above command mounts a local config file to the correct path within the Docker container.

Below is the template of the local config file (JSON file)

{
    "config" : {
        "project_label" : "<ENTER PROJECT LABEL TO CURATE>"
    },
    "inputs" : {
        "api_key" : {
            "base" : "api-key",
            "key" : "<PLACE YOUR API KEY HERE>"
        }
    },
    "destination" : {
	"id" : "<PLACE YOUR SESSION ID HERE>"
}