setup and release for pypi

.github/workflows/release.yaml

@@ -0,0 +1,48 @@
+name: Publish Python distribution to PyPI and TestPyPI
+on: push
+jobs:
+  build:
+    name: Build distribution
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.10"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a binary wheel and a source tarball
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python distribution to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/sniffles/ # Replace <package-name> with your PyPI project name
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distribution to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = sniffles
-version = 2.3.0
+version = 2.3
 author = Moritz Smolka, Hermann Romanek
 author_email = moritz.g.smolka@gmail.com, sniffles@romanek.at
 description = A fast structural variation caller for long-read sequencing data

setup.py

@@ -0,0 +1,14 @@
+from setuptools import setup, find_packages
+
+setup(
+    name='sniffles',
+    version='2.3',
+    packages=find_packages(),
+    url='https://github.com/fritzsedlazeck/Sniffles',
+    license='MIT',
+    author='Moritz Smolka, Hermann Romanek',
+    author_email='moritz.g.smolka@gmail.com, sniffles@romanek.at',
+    description='A fast structural variation caller for long-read sequencing data',
+    long_description=open('README.md').read(),
+    long_description_content_type='text/markdown',
+)