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What should PicardMetricsTask do when the prefix is None and the input file is stdin? #302

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nh13 opened this issue Jun 16, 2017 · 0 comments

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@nh13
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nh13 commented Jun 16, 2017

Currently it does this:

  /** Method that should be used to fetch the file prefix, instead of accessing `prefix` directly. */
  def pathPrefix: PathPrefix = prefix getOrElse PathUtil.removeExtension(in)

Should it instead pipe it to /dev/null? Throw an exception? Let it crash later?

I am logging this issue so I can think about it later.

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