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This repository has been archived by the owner on Jan 24, 2018. It is now read-only.
Just found #1563 which covers this. I'll watch that. Cheers!
Original comment:
Not sure if this is related, but when following the docs, using the example-data fails. SHould I follow this issue or open anew one? Cheers! ( output follows ):
(ga4gh-env) user@localhost:/srv/ga4gh$ ga4gh_server
Traceback (most recent call last):
File "/srv/ga4gh/ga4gh-env/bin/ga4gh_server", line 11, in <module>
sys.exit(server_main())
File "/srv/ga4gh/ga4gh-env/local/lib/python2.7/site-packages/ga4gh/server/cli/server.py", line 51, in server_main
parsedArgs.config_file, parsedArgs.config, parsedArgs.port)
File "/srv/ga4gh/ga4gh-env/local/lib/python2.7/site-packages/ga4gh/server/frontend.py", line 296, in configure
app.backend = _configure_backend(app)
File "/srv/ga4gh/ga4gh-env/local/lib/python2.7/site-packages/ga4gh/server/frontend.py", line 259, in _configure_backend
dataRepository.open(datarepo.MODE_READ)
File "/srv/ga4gh/ga4gh-env/local/lib/python2.7/site-packages/ga4gh/server/datarepo.py", line 618, in open
self.load()
File "/srv/ga4gh/ga4gh-env/local/lib/python2.7/site-packages/ga4gh/server/datarepo.py", line 1425, in load
self._readSystemTable()
File "/srv/ga4gh/ga4gh-env/local/lib/python2.7/site-packages/ga4gh/server/datarepo.py", line 744, in _readSystemTable
raise exceptions.RepoInvalidDatabaseException(self._dbFilename)
ga4gh.server.exceptions.RepoInvalidDatabaseException: Database file 'ga4gh-example-data/registry.db' is malformed. Either change the configuration to point to a valid file or create one using the repo manager.
We unfortunately missed this, it should be in the release process docs http://ga4gh-server.readthedocs.io/en/stable/development.html#release-process
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