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add new bam_native datatype to the registry
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bgruening committed Dec 10, 2017
1 parent eea55a9 commit 2a093f2
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5 changes: 5 additions & 0 deletions config/datatypes_conf.xml.sample
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<display file="igb/bam.xml" />
<display file="iobio/bam.xml" />
</datatype>
<datatype extension="bam_native" type="galaxy.datatypes.binary:BamNative" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM">
<converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/>
<converter file="bam_native_to_bam_converter.xml" target_datatype="bam"/>
</datatype>
<datatype extension="cram" type="galaxy.datatypes.binary:CRAM" mimetype="application/octet-stream" display_in_upload="true" description="CRAM is a file format for highly efficient and tunable reference-based compression of alignment data." description_url="http://www.ebi.ac.uk/ena/software/cram-usage">
<converter file="cram_to_bam_converter.xml" target_datatype="bam"/>
</datatype>
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<datatype extension="roadmaps" type="galaxy.datatypes.assembly:Roadmaps" display_in_upload="false"/>
<datatype extension="sam" type="galaxy.datatypes.tabular:Sam" display_in_upload="true">
<converter file="sam_to_bam.xml" target_datatype="bam"/>
<converter file="sam_to_bam_native.xml" target_datatype="bam_native"/>
<converter file="sam_to_bigwig_converter.xml" target_datatype="bigwig"/>
</datatype>
<datatype extension="scf" type="galaxy.datatypes.binary:Scf" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'scf' format with a '.scf' file extension. You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Scf"/>
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