add untested ability to specify trees in graftm create

[wwood]

Hey,

Somehow all the lines seem to have gone to windows line endings again, too.

Actually dunno if this quite works yet, though it is a simple enough change.

[geronimp]

From now on I’ll run a bash script that automates the commit to github. This will include a conversion of windows line headings.

From: Ben J Woodcroft [mailto:notifications@github.com]
Sent: Wednesday, 29 April 2015 11:09 PM
To: geronimp/graftM
Subject: [graftM] add untested ability to specify trees in graftm create (#27)

Hey,

Somehow all the lines seem to have gone to windows line endings again, too.

Actually dunno if this quite works yet, though it is a simple enough change.

---

You can view, comment on, or merge this pull request online at:

#27

Commit Summary

• add untested ability to specify trees in graftm create

File Changes

• M bin/graftMhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-0 (9)
• M graftm/assembler.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-1 (400)
• M graftm/classify.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-2 (162)
• M graftm/create.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-3 (238)
• M graftm/graftm_output_paths.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-4 (216)
• M graftm/hmmer.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-5 (1172)
• M graftm/housekeeping.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-6 (480)
• M graftm/pplacer.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-7 (456)
• M graftm/run.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-8 (800)
• M graftm/scikit_tree_rerooter.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-9 (106)
• M graftm/summarise.pyhttps://github.com/add untested ability to specify trees in graftm create #27/files#diff-10 (242)

Patch Links:

• https://github.com/geronimp/graftM/pull/27.patch
• https://github.com/geronimp/graftM/pull/27.diff

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Reply to this email directly or view it on GitHubhttps://github.com//pull/27.