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Unable to run the project on Google Colab(2023.01~) #1

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EdgarMITUKI opened this issue Feb 21, 2023 · 3 comments
Closed

Unable to run the project on Google Colab(2023.01~) #1

EdgarMITUKI opened this issue Feb 21, 2023 · 3 comments

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@EdgarMITUKI
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Dear Gibbon Lab
I am a student from Juntendo University in Japan. I have been using the function of qiime2 in your ISB course project for data analysis and study.
Since last month, I suddenly found that I cannot run the project on Google Colab . Tried to use 2022 and 2020 both cannot be carried out. Also tried some other ways not able to run.
I can only run it on the server in Japan. I wonder if it is still possible to run the project on your side?
I hope I can get your help.
Thank you very much and I look forward to your reply.

@EdgarMITUKI
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[06:24:33] 🐍 Downloading miniconda... setup_qiime2:56
🐍 Done. setup_qiime2:62
🐍 Installing miniconda... setup_qiime2:56
[06:24:48] 🐍 Installed miniconda to /usr/local. setup_qiime2:62
🔍 Downloading Qiime 2 package list... setup_qiime2:56
[06:24:49] 🔍 Done. setup_qiime2:62
🔍 Installing Qiime 2. This may take a little bit. setup_qiime2:56
🕐
[06:39:24] 🔍 Done. setup_qiime2:62
🌲 Installing Empress... setup_qiime2:56
[06:39:27] 🌲 Done. setup_qiime2:62
📊 Checking that Qiime 2 command line works... setup_qiime2:56
[06:39:40] 📊 Qiime 2 command line looks good 🎉 setup_qiime2:62
🔍 Fixed import paths to include Qiime 2. setup_qiime2:138
📊 Checking if Qiime 2 import works... setup_qiime2:140
[06:39:41] 📊 Qiime 2 can be imported 🎉 setup_qiime2:146
📊 Setting up QIIME 2 plugins... setup_qiime2:148
[06:39:44] Could not add the plugins 😭 setup_qiime2:153
An exception has occurred, use %tb to see the full traceback.

SystemExit: 1

@cdiener
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cdiener commented Feb 21, 2023

Okay that does not look to bad. Seems to be only the plugin registration. Let me check what is going on and get back to you.

What happens if you run any Time commands after that? Looks like it might still work because the Qiime installation succeeded.

@cdiener
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cdiener commented Feb 21, 2023

Okay, should be fixed now.

@cdiener cdiener closed this as completed Feb 21, 2023
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