Java: Update MaD Declarations after Triage

[max-schaefer]

This PR updates the MaD declarations after a recent triage session.

TR 476

[github-actions]

⚠️ The head of this PR and the base branch were compared for differences in the framework coverage reports. The generated reports are available in the artifacts of this workflow run. The differences will be picked up by the nightly job after the PR gets merged.

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java

Generated file changes for java

• Changes to framework-coverage-java.rst:

-    `Apache Commons IO <https://commons.apache.org/proper/commons-io/>`_,``org.apache.commons.io``,,562,117,98,,,,,15
+    `Apache Commons IO <https://commons.apache.org/proper/commons-io/>`_,``org.apache.commons.io``,,562,118,99,,,,,15
-    Java Standard Library,``java.*``,10,731,237,79,,9,,,24
+    Java Standard Library,``java.*``,10,734,244,85,,9,,,25
-    Others,"``actions.osgi``, ``antlr``, ``ch.ethz.ssh2``, ``cn.hutool.core.codec``, ``com.alibaba.druid.sql``, ``com.alibaba.fastjson2``, ``com.amazonaws.auth``, ``com.auth0.jwt.algorithms``, ``com.azure.identity``, ``com.esotericsoftware.kryo.io``, ``com.esotericsoftware.kryo5.io``, ``com.fasterxml.jackson.core``, ``com.fasterxml.jackson.databind``, ``com.google.gson``, ``com.hubspot.jinjava``, ``com.jcraft.jsch``, ``com.microsoft.sqlserver.jdbc``, ``com.mitchellbosecke.pebble``, ``com.mongodb``, ``com.opensymphony.xwork2``, ``com.rabbitmq.client``, ``com.sshtools.j2ssh.authentication``, ``com.sun.crypto.provider``, ``com.sun.jndi.ldap``, ``com.sun.net.httpserver``, ``com.sun.net.ssl``, ``com.sun.rowset``, ``com.sun.security.auth.module``, ``com.sun.security.ntlm``, ``com.sun.security.sasl.digest``, ``com.thoughtworks.xstream``, ``com.trilead.ssh2``, ``com.unboundid.ldap.sdk``, ``com.zaxxer.hikari``, ``flexjson``, ``freemarker.cache``, ``freemarker.template``, ``groovy.lang``, ``groovy.text``, ``groovy.util``, ``hudson``, ``io.jsonwebtoken``, ``io.netty.bootstrap``, ``io.netty.buffer``, ``io.netty.channel``, ``io.netty.handler.codec``, ``io.netty.handler.ssl``, ``io.netty.handler.stream``, ``io.netty.resolver``, ``io.netty.util``, ``javafx.scene.web``, ``jenkins``, ``jodd.json``, ``liquibase.database.jvm``, ``liquibase.statement.core``, ``net.schmizz.sshj``, ``net.sf.json``, ``net.sf.saxon.s9api``, ``ognl``, ``okhttp3``, ``org.acegisecurity``, ``org.antlr.runtime``, ``org.apache.commons.codec``, ``org.apache.commons.compress.archivers.tar``, ``org.apache.commons.exec``, ``org.apache.commons.httpclient.util``, ``org.apache.commons.jelly``, ``org.apache.commons.jexl2``, ``org.apache.commons.jexl3``, ``org.apache.commons.lang``, ``org.apache.commons.logging``, ``org.apache.commons.net``, ``org.apache.commons.ognl``, ``org.apache.cxf.catalog``, ``org.apache.cxf.common.classloader``, ``org.apache.cxf.common.jaxb``, ``org.apache.cxf.common.logging``, ``org.apache.cxf.configuration.jsse``, ``org.apache.cxf.helpers``, ``org.apache.cxf.resource``, ``org.apache.cxf.staxutils``, ``org.apache.cxf.tools.corba.utils``, ``org.apache.cxf.tools.util``, ``org.apache.cxf.transform``, ``org.apache.directory.ldap.client.api``, ``org.apache.hadoop.fs``, ``org.apache.hadoop.hive.metastore``, ``org.apache.hadoop.hive.ql.exec``, ``org.apache.hadoop.hive.ql.metadata``, ``org.apache.hc.client5.http.async.methods``, ``org.apache.hc.client5.http.classic.methods``, ``org.apache.hc.client5.http.fluent``, ``org.apache.hive.hcatalog.templeton``, ``org.apache.ibatis.jdbc``, ``org.apache.ibatis.mapping``, ``org.apache.log4j``, ``org.apache.shiro.codec``, ``org.apache.shiro.jndi``, ``org.apache.shiro.mgt``, ``org.apache.sshd.client.session``, ``org.apache.struts.beanvalidation.validation.interceptor``, ``org.apache.struts2``, ``org.apache.tools.ant``, ``org.apache.tools.zip``, ``org.apache.velocity.app``, ``org.apache.velocity.runtime``, ``org.codehaus.cargo.container.installer``, ``org.codehaus.groovy.control``, ``org.dom4j``, ``org.eclipse.jetty.client``, ``org.fusesource.leveldbjni``, ``org.geogebra.web.full.main``, ``org.gradle.api.file``, ``org.hibernate``, ``org.influxdb``, ``org.jdbi.v3.core``, ``org.jenkins.ui.icon``, ``org.jenkins.ui.symbol``, ``org.jooq``, ``org.keycloak.models.map.storage``, ``org.kohsuke.stapler``, ``org.mvel2``, ``org.openjdk.jmh.runner.options``, ``org.owasp.esapi``, ``org.pac4j.jwt.config.encryption``, ``org.pac4j.jwt.config.signature``, ``org.scijava.log``, ``org.slf4j``, ``org.thymeleaf``, ``org.xml.sax``, ``org.xmlpull.v1``, ``org.yaml.snakeyaml``, ``play.libs.ws``, ``play.mvc``, ``ratpack.core.form``, ``ratpack.core.handling``, ``ratpack.core.http``, ``ratpack.exec``, ``ratpack.form``, ``ratpack.func``, ``ratpack.handling``, ``ratpack.http``, ``ratpack.util``, ``retrofit2``, ``sun.jvmstat.perfdata.monitor.protocol.local``, ``sun.jvmstat.perfdata.monitor.protocol.rmi``, ``sun.misc``, ``sun.net.ftp``, ``sun.net.www.protocol.http``, ``sun.security.acl``, ``sun.security.jgss.krb5``, ``sun.security.krb5``, ``sun.security.pkcs``, ``sun.security.pkcs11``, ``sun.security.provider``, ``sun.security.ssl``, ``sun.security.x509``, ``sun.tools.jconsole``",131,10516,889,121,6,22,18,,208
+    Others,"``actions.osgi``, ``antlr``, ``ch.ethz.ssh2``, ``cn.hutool.core.codec``, ``com.alibaba.druid.sql``, ``com.alibaba.fastjson2``, ``com.amazonaws.auth``, ``com.auth0.jwt.algorithms``, ``com.azure.identity``, ``com.esotericsoftware.kryo.io``, ``com.esotericsoftware.kryo5.io``, ``com.fasterxml.jackson.core``, ``com.fasterxml.jackson.databind``, ``com.google.gson``, ``com.hubspot.jinjava``, ``com.jcraft.jsch``, ``com.microsoft.sqlserver.jdbc``, ``com.mitchellbosecke.pebble``, ``com.mongodb``, ``com.opensymphony.xwork2``, ``com.rabbitmq.client``, ``com.sshtools.j2ssh.authentication``, ``com.sun.crypto.provider``, ``com.sun.jndi.ldap``, ``com.sun.net.httpserver``, ``com.sun.net.ssl``, ``com.sun.rowset``, ``com.sun.security.auth.module``, ``com.sun.security.ntlm``, ``com.sun.security.sasl.digest``, ``com.thoughtworks.xstream``, ``com.trilead.ssh2``, ``com.unboundid.ldap.sdk``, ``com.zaxxer.hikari``, ``flexjson``, ``freemarker.cache``, ``freemarker.template``, ``groovy.lang``, ``groovy.text``, ``groovy.util``, ``hudson``, ``io.jsonwebtoken``, ``io.netty.bootstrap``, ``io.netty.buffer``, ``io.netty.channel``, ``io.netty.handler.codec``, ``io.netty.handler.ssl``, ``io.netty.handler.stream``, ``io.netty.resolver``, ``io.netty.util``, ``javafx.scene.web``, ``jenkins``, ``jodd.json``, ``liquibase.database.jvm``, ``liquibase.statement.core``, ``net.schmizz.sshj``, ``net.sf.json``, ``net.sf.saxon.s9api``, ``ognl``, ``okhttp3``, ``org.acegisecurity``, ``org.antlr.runtime``, ``org.apache.commons.codec``, ``org.apache.commons.compress.archivers.tar``, ``org.apache.commons.exec``, ``org.apache.commons.httpclient.util``, ``org.apache.commons.jelly``, ``org.apache.commons.jexl2``, ``org.apache.commons.jexl3``, ``org.apache.commons.lang``, ``org.apache.commons.logging``, ``org.apache.commons.net``, ``org.apache.commons.ognl``, ``org.apache.cxf.catalog``, ``org.apache.cxf.common.classloader``, ``org.apache.cxf.common.jaxb``, ``org.apache.cxf.common.logging``, ``org.apache.cxf.configuration.jsse``, ``org.apache.cxf.helpers``, ``org.apache.cxf.resource``, ``org.apache.cxf.staxutils``, ``org.apache.cxf.tools.corba.utils``, ``org.apache.cxf.tools.util``, ``org.apache.cxf.transform``, ``org.apache.directory.ldap.client.api``, ``org.apache.hadoop.fs``, ``org.apache.hadoop.hive.metastore``, ``org.apache.hadoop.hive.ql.exec``, ``org.apache.hadoop.hive.ql.metadata``, ``org.apache.hc.client5.http.async.methods``, ``org.apache.hc.client5.http.classic.methods``, ``org.apache.hc.client5.http.fluent``, ``org.apache.hive.hcatalog.templeton``, ``org.apache.ibatis.jdbc``, ``org.apache.ibatis.mapping``, ``org.apache.log4j``, ``org.apache.shiro.codec``, ``org.apache.shiro.jndi``, ``org.apache.shiro.mgt``, ``org.apache.sshd.client.session``, ``org.apache.struts.beanvalidation.validation.interceptor``, ``org.apache.struts2``, ``org.apache.tools.ant``, ``org.apache.tools.zip``, ``org.apache.velocity.app``, ``org.apache.velocity.runtime``, ``org.codehaus.cargo.container.installer``, ``org.codehaus.groovy.control``, ``org.dom4j``, ``org.eclipse.jetty.client``, ``org.fusesource.leveldbjni``, ``org.geogebra.web.full.main``, ``org.gradle.api.file``, ``org.hibernate``, ``org.influxdb``, ``org.jdbi.v3.core``, ``org.jenkins.ui.icon``, ``org.jenkins.ui.symbol``, ``org.jooq``, ``org.keycloak.models.map.storage``, ``org.kohsuke.stapler``, ``org.mvel2``, ``org.openjdk.jmh.runner.options``, ``org.owasp.esapi``, ``org.pac4j.jwt.config.encryption``, ``org.pac4j.jwt.config.signature``, ``org.scijava.log``, ``org.slf4j``, ``org.thymeleaf``, ``org.xml.sax``, ``org.xmlpull.v1``, ``org.yaml.snakeyaml``, ``play.libs.ws``, ``play.mvc``, ``ratpack.core.form``, ``ratpack.core.handling``, ``ratpack.core.http``, ``ratpack.exec``, ``ratpack.form``, ``ratpack.func``, ``ratpack.handling``, ``ratpack.http``, ``ratpack.util``, ``retrofit2``, ``sun.jvmstat.perfdata.monitor.protocol.local``, ``sun.jvmstat.perfdata.monitor.protocol.rmi``, ``sun.misc``, ``sun.net.ftp``, ``sun.net.www.protocol.http``, ``sun.security.acl``, ``sun.security.jgss.krb5``, ``sun.security.krb5``, ``sun.security.pkcs``, ``sun.security.pkcs11``, ``sun.security.provider``, ``sun.security.ssl``, ``sun.security.x509``, ``sun.tools.jconsole``",131,10518,893,124,6,22,18,,209
-    Totals,,308,18945,2551,331,16,128,33,1,407
+    Totals,,308,18950,2563,341,16,128,33,1,409

• Changes to framework-coverage-java.csv:

- java.io,50,1,46,,,,,,,,,22,,,,,,,,,,,,,,,28,,,,,,,,,,,,,,,,,,,,,1,,44,2
+ java.io,51,1,46,,,,,,,,,22,,,,,,,,,,,,,,,29,,,,,,,,,,,,,,,,,,,,,1,,44,2
- java.lang,33,3,101,,13,,,,,,1,,,,,,,,,,,,8,,,,6,,,4,,,1,,,,,,,,,,,,,,3,,,58,43
+ java.lang,38,3,101,,13,,,,,,1,,,,,,,,,,,,8,,,,11,,,4,,,1,,,,,,,,,,,,,,3,,,58,43
- java.net,21,3,23,,,,1,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,19,,,,,,,,,,,,,3,23,
+ java.net,22,3,24,,,,1,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,20,,,,,,,,,,,,,3,24,
- java.nio,49,,36,,,,,,,,,5,,,,,,,,,,,,,,,43,,,,,,,,,1,,,,,,,,,,,,,,36,
+ java.nio,49,,37,,,,,,,,,5,,,,,,,,,,,,,,,43,,,,,,,,,1,,,,,,,,,,,,,,37,
- java.util,47,2,519,,,,,,,,,1,,,,,,,,,,,34,,,,2,,,,5,2,,1,2,,,,,,,,,,,,2,,,45,474
+ java.util,47,2,520,,,,,,,,,1,,,,,,,,,,,34,,,,2,,,,5,2,,1,2,,,,,,,,,,,,2,,,46,474
- org.apache.commons.io,117,,562,,,,,,,,,4,,,,,,,,,,,,,,,98,,,,,,,,,15,,,,,,,,,,,,,,548,14
+ org.apache.commons.io,118,,562,,,,,,,,,4,,,,,,,,,,,,,,,99,,,,,,,,,15,,,,,,,,,,,,,,548,14
- org.apache.hadoop.fs,,,10,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,10,
+ org.apache.hadoop.fs,3,,11,,,,,,,,,,,,,,,,,,,,,,,,3,,,,,,,,,,,,,,,,,,,,,,,11,
- org.eclipse.jetty.client,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1,,,,,,,,,,,,,,,
+ org.eclipse.jetty.client,2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,2,,,,,,,,,,,,,,,
- org.gradle.api.file,,,2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,2,
+ org.gradle.api.file,,,3,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,3,

[max-schaefer]

@atorralba, the last commit changes a few Argument[...]s in MaD source models you authored to Parameter[...]s. It seems we generally use the former for sinks and the latter for sources (and it makes sense to me that way around), but let me know if I'm missing something here.

[aschackmull]

@atorralba, the last commit changes a few Argument[...]s in MaD source models you authored to Parameter[...]s. It seems we generally use the former for sinks and the latter for sources (and it makes sense to me that way around), but let me know if I'm missing something here.

I haven't looked at the commit, but I just want to drive-by note that both Argument[..] and Parameter[..] makes sense for sources and has separate meaning. A Parameter[..] source means that the corresponding parameter node will be tainted, i.e. we expect the source to contain an implementation of the callable such that we can start taint tracking in that callable. An Argument[...] source on the other hand means that we don't expect to see an implementation of the callable, but rather that the callable is a library function that we expect leaves the corresponding argument tainted as a side-effect of a call to the callable.

[atorralba]

Oh, you removed the whole file containing Kotlin models 😅 I meant removing only your new row, which contained the problematic $.

[max-schaefer]

Whoops, that was a bit overeager, apologies! Now fixed.

[atorralba]

Happy to merge when tests pass. Thank you for indulging all my comments and multiple review rounds 🙇

[max-schaefer]

No worries at all, thank you for your very thorough review!