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Upgraded some package versions to fix security issues.
Also upgraded Python version from 3.11 to 3.13 as 3.11 support has ended.
Removed
Removed the dipy package and its dependencies.
These were causing installation issues on MacOS and Windows.
These are used by the optic flow module which is currently not in use. It
is planned to be included in a version after 1.0 and the installation
issues will be fixed at that time.