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While converting an Isyntax file to raw tiff file using the command below gerenrated 'No such file or directory' error.
Command:
isyntax2raw write_tiles --file_type='tiff' input.isyntax outdir
Error:
FileNotFoundError: [Errno 2] No such file or directory: '...path_to_directory/1/0'
Traceback (most recent call last):
File "/usr/local/bin/isyntax2raw", line 8, in
sys.exit(main())
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/cli/isyntax2raw.py", line 79, in main
cli()
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 764, in call
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 1137, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/cli/isyntax2raw.py", line 70, in write_tiles
wt.write_label_image()
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/init.py", line 272, in write_label_image
self.write_image_type("LABELIMAGE", 1)
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/init.py", line 297, in write_image_type
self.create_tile_directory(series, 0, width, height)
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/init.py", line 330, in create_tile_directory
os.mkdir(tile_directory)
The text was updated successfully, but these errors were encountered:
chris-allan
added a commit
to chris-allan/isyntax2raw
that referenced
this issue
May 19, 2020
)
None of the downstream infrastructure supports non-N5/Zarr layouts
anymore. Much of the underlying code in this package has also moved to
the N5/Zarr style. Since we will not be maintaining, or testing, the
non-N5/Zarr layouts going forward it is safest to remove them.
While converting an Isyntax file to raw tiff file using the command below gerenrated 'No such file or directory' error.
Command:
isyntax2raw write_tiles --file_type='tiff' input.isyntax outdir
Error:
FileNotFoundError: [Errno 2] No such file or directory: '...path_to_directory/1/0'
Traceback (most recent call last):
File "/usr/local/bin/isyntax2raw", line 8, in
sys.exit(main())
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/cli/isyntax2raw.py", line 79, in main
cli()
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 764, in call
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 1137, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.6/dist-packages/Click-7.0-py3.6.egg/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/cli/isyntax2raw.py", line 70, in write_tiles
wt.write_label_image()
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/init.py", line 272, in write_label_image
self.write_image_type("LABELIMAGE", 1)
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/init.py", line 297, in write_image_type
self.create_tile_directory(series, 0, width, height)
File "/usr/local/lib/python3.6/dist-packages/isyntax2raw/init.py", line 330, in create_tile_directory
os.mkdir(tile_directory)
The text was updated successfully, but these errors were encountered: