GRAPE 2.0 provides an extensive pipeline for RNA-Seq analyses. It allows the creation of an automated and integrated workflow to manage, analyse and visualize RNA-Seq data.
GRAPE 2.0 is release under GPL. See the LICENSE.txt file.
The latest GRAPE 2.0 documentation can be found at:
http://grape-pipeline.rtfd.org
Before installing GRAPE 2.0 some dependendencies need to be installed:
$ pip install distribute==0.6.36 zc.buildout==2.1.0
GRAPE 2.0 can then be installed with pip (since GRAPE 2.0 development is in beta stage you will need the --pre option):
$ pip install grape-pipeline --pre
or it can be easily installed from source:
$ git clone git://github.com/grape-pipeline/grape.git
$ cd grape
$ make install
The installation con be activated running the following command from the grape folder:
$ source bin/activate
If you want to contribute to the GRAPE 2.0 development you can get the code from github and get started:
$ git clone git://github.com/grape-pipeline/grape.git
$ cd grape
$ make develop