upgrade dependencies

[nikgraf]

No description provided.

[Copilot]

Pull Request Overview

This PR upgrades various dependencies across the monorepo to their latest versions. The updates include React-related libraries, TypeScript, build tools, and UI components.

• Updates Effect ecosystem packages to 3.17.8
• Upgrades TanStack Router and React Query to their latest versions
• Updates build tools like Vite, TypeScript, and Tailwind CSS
• Addresses linting issues with biome ignore comments for SVG clipPath IDs

Reviewed Changes

Copilot reviewed 24 out of 25 changed files in this pull request and generated 2 comments.

Show a summary per file

File	Description
package.json	Updates root-level dependencies including Biome, Babel, and TypeScript
packages/*/package.json	Upgrades dependencies for all packages in the monorepo
apps/*/package.json	Updates dependencies for all application packages
biome.jsonc	Updates Biome schema version and ignore patterns
.changeset/many-times-wash.md	Adds changeset entry for dependency upgrades
Status.tsx	Adds biome ignore comments for hardcoded SVG clipPath IDs
PublishedToKnowledgeGraph.tsx	Adds biome ignore comments for hardcoded SVG clipPath IDs
KnowledgeGraphBrowser.tsx	Replaces hardcoded ID with useId hook for search field
AppSchemaSpaceDialog.tsx	Replaces hardcoded ID with useId hook for space selector
HypergraphAppContext.tsx	Changes map to forEach for side effect operation
routeTree.gen.ts	Regenerated router files with updated import patterns
authenticate.tsx	Adds URL decoding for search parameters
parse-auth-params.ts	Adds temporary console.log for debugging
index.ts	Adds radix parameter to parseInt for better parsing

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