Add PanCanAtlas Data Download #75
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uncompressed md5sum is equivalent
cgreene
reviewed
Apr 18, 2018
README.md
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| # Create and activate conda environment | ||
| conda env create --quiet --force --file environment.yml | ||
| source activate pancancer-classifier | ||
| git clone git@github.com:greenelab/pancancer.git |
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Is this sufficient to get the data from git-lfs?
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I believe if the user has Git LFS installed, this command will download LFS assets... probably worth testing, and perhaps mentioning in README to make sure to have git-lfs installed. Alternatively you can add https://anaconda.org/conda-forge/git-lfs to the environment. (clone comes before env install, so that doesn't make sense)
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Yeah, I think that is how it would work too. I will add that note here as well
dhimmel
approved these changes
Apr 18, 2018
This was referenced Apr 18, 2018
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Adding instructions to download raw, versioned data. These raw files are not tracked, but the processed datasets used in Way et al. 2018 are added here.