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Welcome to the TreeSAPP Wiki!

Documentation

You will find all of our documentation for the current release below and in the sidebar to the right. It is divided into three sections:

• Installation
  • Installing TreeSAPP
  • Installing dependencies
• Usage
  • treesapp create
  • treesapp purity
  • treesapp evaluate
  • treesapp assign
  • treesapp colour
  • treesapp layer
  • treesapp update
  • treesapp phylotu
  • treesapp abundance
  • treesapp package
• Tutorials
  • PmoA and AmoA
  • Integrating MAGs and SAGs in reference packages

General pointers regarding TreeSAPP usage and behaviour can be found here.

Answers to FAQs are here.

Yet to come

• Interpreting treesapp assign results

Don't see what you're looking for? Create an issue using the GitHub issue tracker.