Collection of tools for exploring higher-order networks. Follows are their original links, we make copies in case some of them might be broken in the future.
| Tool | Link |
|---|---|
| MFinder | https://www.weizmann.ac.il/mcb/UriAlon/download/ParTI |
| MAVisto | https://kim25.wwwdns.kim.uni-konstanz.de/vanted/addons/mavisto/ |
| FANMOD | https://github.com/gabbage/fanmod-cmd |
| Grochow–Kellis | https://github.com/jptboy/CSCI3104_GC2 |
| MODA | https://github.com/smbadiwe/ParaMODA |
| Kavosh | https://github.com/shmohammadi86/Kavosh |
| G-Tries | https://www.dcc.fc.up.pt/gtries/ |
| TemporalMotif | http://snap.stanford.edu/temporal-motifs/ |
| MODET | https://github.com/sabyasachipatra/modet |
| Tool | Link |
|---|---|
| Simplicial | https://simplicial.readthedocs.io/en/latest/ |
| Javaplex | https://github.com/appliedtopology/javaplex |
| Ripser | https://github.com/Ripser/ripser |
| simplextree | https://github.com/peekxc/simplextree |
| Simplicial.jl | https://github.com/nebneuron/Simplicial.jl |
| simplicial-complex | https://www.npmjs.com/package/simplicial-complex |
| Dionysus 2 | https://mrzv.org/software/dionysus2/ |
| DIPHA | https://github.com/DIPHA/dipha |
| Perseus | https://people.maths.ox.ac.uk/nanda/perseus/ |
| Moise | https://www.math.drexel.edu/~ahicks/Moise/ |
| Tool | Link |
|---|---|
| HyperG | https://cran.r-project.org/web/packages/HyperG/ |
| HyperNetX | https://github.com/pnnl/HyperNetX |
| GraphML | http://graphml.graphdrawing.org/index.html |
| hypergraph | https://bioconductor.org/packages/3.15/bioc/html/hypergraph.html |
| SimpleHypergraphs.jl | https://github.com/pszufe/SimpleHypergraphs.jl |
| halp | https://murali-group.github.io/halp/ |
| kahypar | https://pypi.org/project/kahypar/ |
| Tensorly | http://tensorly.org/stable/index.html |
| Tensors.jl | https://juliahub.com/ui/Packages/Tensors/F7rKl/1.11.0 |
| rTensor | https://cran.r-project.org/web/packages/rTensor |