Code Example: SRI Immunization Model

[ghost]

When running the sri.model.animate(21) function, I get an index error. Any help is appreciated.

[jlstevens]

@senayyitbarek Thanks for reporting this!

I've started a PR (referenced above) to make fixes. The main things I had to do was use:

            path_data = [list(el[()]) for el in paths]
            # Create network path and node Elements
            network_paths = hv.Path(path_data, key_dimensions=spatial_dims)
            network_nodes = hv.Points(np.hstack([points, state_array]),
                                      key_dimensions=spatial_dims,
                                      value_dimensions=['State'])
            
            # Create overlay and accumulate in network HoloMap
            network_hmap[i] = (network_paths * network_nodes * nlabel).relabel(group='Network', label='SRI')
            self.step()

        # Create Overlay of Curves
        curves = hv.NdOverlay({label: hv.Curve(zip(range(steps), sird[:, i]),
                                               kdims=['Time'], vdims=['Count'])

In the animate loop.

The main changes are: the data format supplied to Path was invalid and key_dimensions and value_dimensions in the NdOverlay had to be changed to kdims and vdims.

[philippjfr]

This has been fixed a while ago and further discussion about topics notebooks should happen in: #1638

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