Teaching

Code snippets used for teaching

R for beginners

1. Rafael A. Irizarry has a comprehensive book for the use of R in data science.
2. Emmanuel Paradis has contributed a nice document for beginners.
3. Very quick summary is available here
4. There are plenty of useful videos on YouTube (increase the playback speed if you are in a hurry)

• R tutorial - Learn R Programming
• R tutorial - Learn ggplot2
• Import and manipulate data into R
• Introduction to statistics with R

4. Bioconductor for Sequence Analysis
5. Biostrings slide deck for basic genomic operations
6. RNAseq analysis in R (functional enrichment)

DNA sequencing technologies

1. Illumina sequencing video
2. PacBio sequencing video
3. Oxford nanopore sequencing video
4. Sanger sequencing video
5. DNA nanoball sequencing video

Bioinformatics core competencies for undergraduate life sciences education

Citation: Wilson Sayres MA, Hauser C, Sierk M, Robic S, Rosenwald AG, Smith TM, et al. (2018) Bioinformatics core competencies for undergraduate life sciences education. PLoS ONE 13(6): e0196878. https://doi.org/10.1371/journal.pone.0196878

Table 2 in the above citation defines core competencies in bioinformatics for ALL life scientists.