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v3.2.0

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@github-actions github-actions released this 05 Oct 06:34
· 307 commits to main since this release
v3.2.0
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claude Claude
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Learn about vigilant mode.

✨ Features

  • plugins: nuclei-seeded watershed: one cell per nucleus
  • plugins: PlantSeg: boundary U-Net, then GASP or multicut
  • careamics: optional Noise2Void denoising before segmenting
  • workflow: seed_labels: grow cells from nuclei already segmented

🏗️ Build

  • pixi: ️ plantseg and careamics environments

🐛 Bug Fixes

  • pixi: require the patchworks the repository's scripts use
  • napari: labels fail to draw from an environment on a network share
  • workflow: watershed and PlantSeg cells merged at tile seams
  • workflow: multi runs crashed after converting with a fixed tile_shape

📝 Documentation

  • cells from a membrane stain
  • example run: Cellpose nuclei, PlantSeg cells seeded from them

👥 Contributors

Contributors

claude
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