Skip to content
Tutorials for the InterMine Python web client
Jupyter Notebook
Branch: master
Clone or download
yochannah Merge pull request #44 from yochannah/template-error
specify python version 3.5 in binder
Latest commit 1161356 Oct 15, 2019

README.md

Binder

intermine-ws-python-docs

Tutorials for the InterMine Python web client

This repository comprises of tutorials to help you get familiarised with the intermine-python package. The tutorials are in the form of Jupyter-Notebooks. You can either install Jupyter on your machine, download the tutorials and then run them on your local machine or you can use Jupyter's notebook viewer facility to view the tutorials online. You can find the NBViewer service at: https://nbviewer.jupyter.org/

If you already have python installed on your machine, you can pip install Jupyter. If you do not have Python on your machine, you can download and install Anaconda as it would install Python along with Jupyter and many other packages. http://jupyter.readthedocs.io/en/latest/install.html

Table of Contents

Tutorial 0: Registry Features

The utilies of extracting data about mine/organism using registry

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 1: Basics of a Query

The basics that you need to create and run a query.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 2: Adding Constraints

Adding simple constraints to make your queries more useful.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 3: More about constraints

Different types of constraints.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 4: Query Features

Joins and Path Descriptions.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 5: Query Results

Dealing with results of your query.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 6: Advanced Results Management

Filtering and Processing Results

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 7: Templates

Basics of calling a template.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 8: Accessing Templates

Authoring and Accessing your templates.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 9: Lists

Creating and saving lists from identifiers.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 10: Enrichment Calculations

Performing Enrichment calculations on lists.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 11: Combining Lists

Combining lists using set operations.

  • Try live: Binder
  • Try live (with completed answers): Binder

Tutorial 12: More to do with queries

Covers additional and useful operations on queries

  • Try live: Binder
  • Try live (with completed answers): Binder
You can’t perform that action at this time.